Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00630 ATGGCCGCAGAATCAATGCAGTCTATGTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGATCCAGAATTCGAACGTCTCGATTCACTCCCATGGAATTCATCGATCCCTATCGACGACACTTTATCTGCATTTATTGGTTCCAATGATCTCGAAGGAGGCTTTCTTTCCCTTGAGGAGATTGACGAAGCTGAGTATGGCTTGGTGATTCCTGAACCTGACACAATGAAACACAAATTGATACCAAAAGCCAGTGGAAATTCAAGGAAAGAGGAGCAAAATAATGCTGATTTCTGTGGGGATGCATCACGAGGTAGCAATGATAGTATTGATAAGGAAGCTGTGGGGCACAACGTGAATACGAAAACTAGCAAAAAAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAAAAGGTCATTCTTGAAGTCCCAACGACAGAGGAAGCTGTAGCTAAAGATATTGGTGGCAATAATAATGATGGGATTGAGACAGAGATTGGAGATGAAATGGACGATGGTGATCATTTGGAGACAGAGAGTAAGCAACAAAAGAAAGAAAAAGAAATGAAGAACCATGGAACTGATAAAGAAATCAGGGATGAAGTTGAAAAGGATGCAGTTGATGAAACAGAATATTATGCATGGAATGAGTTAAGACTTCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCAATCCAGAAAGCATGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATTCTACAACGATTCTTGGATGAACGGGAGAAATCTGGAAAGATGTCTGAAGAAAAAGGATTAGATGCAAAAAAATATGCTCCCAAAAGCCTTCTACGGGCTTTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTATAGATATCAGGGTGGTTCCAATTGTTGGTGGAATGTCCACCGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCCGAGGTTGTAGTTGGAACTCCTGGACGGTTGTGGGAACTTATGTCAGGAGGAGAAAAGCATCTTGTAGAGTTGGAGGCATTGTCTTTCTTTGTGTTGGATGAGGCTGATAGGATGATAGAAAATGGACACTTTCGTGAGTTGCAGTCCATTATAGATATGCTTCCTGTGACCAATGGTTCTGCAGAAAATTTACAAAATACAGAGAACTCTTTGACCACTCCAAGTTCTCAAAGAAAGAAAAGGCAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCCGATTTCCGTAAGAAACTAAAGCGTGGATCATCCAAACCTAACCAATCGGGGATGGATGGTTTGAATTCTATAGAAGCTCTATCTGAGAGAGCTGGAATAAGACCTAATGTTGCTGTTATAAATCTGACAAACACATCAGTTTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACATTCTGTCTGTTTATGGACAAGGTCGCACTATTGTGTTTTGTACATCCATAGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGTGTTAACGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTCGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCGGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCCGATGGTTGCAGTATCGCGTTGGTCTCAGCCAATGAAACTTCCAAATTTGCATCTCTGTGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTCGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCGCGCCAGATTGACAAGATTGTGCGGAAGGAATCCCAGGAGAAGGCAAGTAAAACTTGGTTTGAGCGGAATGCAGAGTTAGTGGAATTAGTTGTGGACAACGATGACAGTGAAGAGGAGAGAGCAAACAATTATAAGCAGAAGAAAGTAGGCTGCATCCAGTTAAAGAAACTGCAGCAGGAGCTCGACAAGCTGCTTTCCCACCCTTTGCAACCAAAATCATTTTCACACCGATATTTGGCTGGTGCTGGAGTTTCACCTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGAACGCTTCTGTTCAGACTATGGGGGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTA 2415 41.99 MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNADFCGDASRGSNDSIDKEAVGHNVNTKTSKKGKKEKKKKKKKKVILEVPTTEEAVAKDIGGNNNDGIETEIGDEMDDGDHLETESKQQKKEKEMKNHGTDKEIRDEVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGLDAKKYAPKSLLRALIITPTRELALQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQNTENSLTTPSSQRKKRQTLVFSATLSLSSDFRKKLKRGSSKPNQSGMDGLNSIEALSERAGIRPNVAVINLTNTSVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKIVRKESQEKASKTWFERNAELVELVVDNDDSEEERANNYKQKKVGCIQLKKLQQELDKLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQNASVQTMGDNKRRKLAAFGQDLTEPLQALRTGGQQV 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6580078 6598704 - MELO3C023052.2.1 Cme05g00630 327693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00630 805 MobiDBLite consensus disorder prediction 1 35 - -
Cme05g00630 805 Gene3D - 175 465 IPR027417 -
Cme05g00630 805 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 669 IPR001650 -
Cme05g00630 805 SMART ultradead3 235 477 IPR014001 -
Cme05g00630 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 637 IPR027417 -
Cme05g00630 805 PANTHER RNA HELICASE 110 770 - -
Cme05g00630 805 Pfam Helicase conserved C-terminal domain 513 621 IPR001650 -
Cme05g00630 805 MobiDBLite consensus disorder prediction 177 199 - -
Cme05g00630 805 MobiDBLite consensus disorder prediction 125 142 - -
Cme05g00630 805 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 464 IPR014001 -
Cme05g00630 805 MobiDBLite consensus disorder prediction 82 199 - -
Cme05g00630 805 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 387 395 IPR000629 -
Cme05g00630 805 SMART helicmild6 541 622 IPR001650 -
Cme05g00630 805 Gene3D - 491 735 IPR027417 -
Cme05g00630 805 CDD SF2_C_DEAD 502 631 - -
Cme05g00630 805 CDD DEADc_DDX24 227 490 - -
Cme05g00630 805 Pfam DEAD/DEAH box helicase 240 447 IPR011545 GO:0003676|GO:0005524
Cme05g00630 805 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 216 244 IPR014014 GO:0003724
Cme05g00630 805 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 110 770 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00630 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - csv:101209958 1463.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00630 Cme-Chr5:6580078 Cme09g01955 Cme-Chr9:23520889 7.11E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00630 Cme_Chr05 FPKM 2.988038 3.378711 2.55961 3.053781 3.957074 4.152936 4.2802 3.092211 3.832643 2.242477