Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00632 ATGCACCGCTTCGCCTCAGGCCTCGCTTCCAAAGCCCGCCTTGCTAGGAACAGTACCAATCAGATTGCTAGTCGGTCTAGCTGGAGCAGAAACTATGCTGCGAAAGATGTTAAATTTGGGGTGGAGGCTCGAGGTCTTATGCTCAAGGGTGTCGAAGATCTTGCTGAAGCGGTTAAAGTCACAATGGGTCCGAAGGGGCGCAATGTAGTGATTGAACAAAGTTACGGGGCTCCCAAAGTTACAAAAGATGGAGTGACTGTTGCTAAGAGCATCGAGTTTAAAGATAAAATCAAGAATGTTGGTGCCAGTCTTGTGAAGCAGGTTGCTAATGCAACCAATGATGTGGCCGGCGATGGGACCACTTGTGCTACTATTCTTACAAGAGCAATATTTACGGAGGGCTGCAAGTCTGTTGCTGCTGGAATGAATGCCATGGATTTAAGACGTGGCATCTCCATGGCAGTTGATTCTGTAGTAACAAACTTGAAGAGTAGAGCACGAATGATAAGCACATCTGAAGAGATAGCTCAGGTCGGGACAATATCTGCCAATGGAGAAAGGGAAATTGGTGAGTTAATTGCCAAGGCCATGGAGAAAGTTGGCAAGGAGGGTGTGATCACCATCTCGGATGGGAAGACATTATATAATGAGTTGGAAGTCGTTGAAGGGATGAAGTTAGACAGGGGATATATTTCCCCTTATTTCATTACAAACCAAAAGAACCAGAAATGTGAATTGGAGGATCCTCTTATTCTAATCCATGAAAAGAAAATCTCAAGCATAAATGCTGTGGTGAAAGTTTTAGAGCTGGCTCTGAAGAGGCAAAGACCCCTTCTTATTATTTCCGAAGATGTTGAAAGTGATGCACTAGCCACTCTTATCCTGAATAAGCTCCGTGCTGGAATTAAGGTCTGTGCCATTAAAGCACCAGGTTTTGGGGAAAATAGGAAGGCTGGACTGCAGGACCTTGCAGTTCTCACTGGTGGTGAAGTCATTACTGAAGAGCTTGGAATGAATCTTGAGAAAGTTGATCTGGATATGCTTGGCTCTTGCAAGAAGATCACAATTTCAAAGGATGATACAGTTATTCTTGATGGTGCCGGTGACAAGAAAGCTATTGAGGAAAGATGTGAACAGATAAGAGCTGGTATCGAAGCAAGCACTTCGGACTATGACAAGGAGAAGTTACAGGAGAGATTGGCGAAACTCTCTGGCGGCGTGGCTGTATTGAAGATTGGAGGAGCAAGTGAAGCAGAAGTGGGTGAAAAGAAGGATAGAGTCACCGACGCCTTGAATGCCACAAAAGCAGCGGTTGAAGAAGGAATAGTACCAGGTAGGTTATTTCTCCACGTGCTAGCTATAATTTTATATATTACAACTGAAGGATACTGA 1392 44.47 MHRFASGLASKARLARNSTNQIASRSSWSRNYAAKDVKFGVEARGLMLKGVEDLAEAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATILTRAIFTEGCKSVAAGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILIHEKKISSINAVVKVLELALKRQRPLLIISEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGEVITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKAIEERCEQIRAGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGRLFLHVLAIILYITTEGY 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6645406 6650005 - MELO3C023058.2.1 Cme05g00632 327695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00632 463 Gene3D - 37 445 IPR027413 -
Cme05g00632 463 PRINTS 60kDa chaperonin signature 58 84 IPR001844 GO:0042026|GO:0140662
Cme05g00632 463 PRINTS 60kDa chaperonin signature 114 141 IPR001844 GO:0042026|GO:0140662
Cme05g00632 463 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026|GO:0140662
Cme05g00632 463 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026|GO:0140662
Cme05g00632 463 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026|GO:0140662
Cme05g00632 463 TIGRFAM GroEL: chaperonin GroL 34 445 IPR001844 GO:0042026|GO:0140662
Cme05g00632 463 Gene3D GroEL 223 404 IPR027409 -
Cme05g00632 463 Gene3D - 168 441 IPR027410 -
Cme05g00632 463 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 15 446 - -
Cme05g00632 463 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 15 446 - -
Cme05g00632 463 Pfam TCP-1/cpn60 chaperonin family 54 445 IPR002423 GO:0005524
Cme05g00632 463 CDD GroEL 35 445 IPR001844 GO:0042026|GO:0140662
Cme05g00632 463 SUPERFAMILY GroEL equatorial domain-like 34 260 IPR027413 -
Cme05g00632 463 SUPERFAMILY GroEL apical domain-like 216 407 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00632 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101210207 841.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00607 Cme-Chr1:4975209 Cme05g00632 Cme-Chr5:6645406 4.17E-104 dispersed
Cme01g02842 Cme-Chr1:35326492 Cme05g00632 Cme-Chr5:6645406 0 dispersed
Cme05g00632 Cme-Chr5:6645406 Cme11g01824 Cme-Chr11:26428504 2.79E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00632 Cme_Chr05 FPKM 25.525974 27.404715 29.606983 32.83234 30.756723 27.376287 32.009464 29.615757 29.522112 31.426947