Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00647 ATGGCGGCTACAGATTGCTCTCTCACTCTGGCCCAACTCCTCGGTCCAAATGTCACCAACTCCGGTGCCGCCGCCTCCTTCATTTGCGACAAATTCACCACCTCCACCCACAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTTCTCTTCTCCGCCTATCTCGTCTTCTCCATGCAGCTCGGCTTTGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGCGGCCTTTTCTACTACCTCTTCGGCTTCGCCTTCGCTTTTGGCACTCCCTCCAACCCCTTCATCGGCCGTCATTTCTTTGGCCTCAAATCAATCCCTTCCACCGCCGCCGATTACAGCTTCTTTCTCTATCAGTGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGCTCAATTGCCGAGCGAACCCAATTCGTTGCCTATTTGATCTACTCCTCTGTTTTGACCGGTTTTGTTTACCCGGTTGTGTCCCATTGGTTCTGGTCTCCAGACGGTTGGGCCAGCCCGTCACGGTCCAACGGCGATCTCTTATTTGGAACCGGAGTCATAGATTTCGCTGGTTCAGGCGTGGTTCACATGGTTGGTGGAATCGCTGGACTTTGGGGTGCTTTAATCGAAGGTCCTCGAATCGGCCGATTCGACAAAACCGGTAGATCTGTTGCTTTACGTGGCCATAGTGCTACGTTAGTCGTTCTCGGTACATTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCCTTCACTAAGATCTTAGTTCCTTATGGTTCAAATAATTTCTACGGACAGTGGAGCGCCGTCGGTCGGACCGCCGTGACGACAACACTAGCTGGTTGCACAGCTGCACTAACGACCCTTTTCGGAAAACGAATTTTATCCGGCCATTGGAACGTCACCGATGTCTGCAACGGCTTACTTGGTGGGTTCGCCGCCATAACCTCCGGCTGCTCGGTGGTGGAGCCGTGGGCGGCTGTGATATGTGGGTTTGTGGCAGCGATAGTTTTAATCAGCTGTAATAAACTAGCAGAGAAGGTGAAATTCGACGACCCACTAGAAGCGGCACAATTGCACGGAGGTTGCGGGGCATGGGGGATAATATTCACGGCGTTGTTCGCGACAAAGAAGTATGTAAACGAGGTGTACGGCGGGGATGCAGGGCGGCCACACGGGTTATTTATGGGTGGGGGAGGGAAGTTGTTGGGTGCACATTTGATACAAATTTTGGTGATTATTGGTTGGGTTAGTGTTACCATGGGGCCATTGTTTTATGGGTTACATAAGCTGAAACTATTAAGAATCTCGCCGGAGGATGAGATGGCCGGAATGGATATGACTAGACATGGTGGATTTGCTTACGTATACCATGATGAAGATGAATCTCCGACCAATGGGATCCAAATTAGTAGGATTAGGCCAGGGGAAACAAGTCCAATTGAAAATTAA 1503 52.1 MAATDCSLTLAQLLGPNVTNSGAAASFICDKFTTSTHNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNPFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDKTGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGSNNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAIVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKKYVNEVYGGDAGRPHGLFMGGGGKLLGAHLIQILVIIGWVSVTMGPLFYGLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESPTNGIQISRIRPGETSPIEN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6930540 6932540 - MELO3C023074.2.1 Cme05g00647 327710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00647 500 MobiDBLite consensus disorder prediction 481 500 - -
Cme05g00647 500 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme05g00647 500 Gene3D Ammonium transporter AmtB like domains 27 491 IPR029020 -
Cme05g00647 500 PANTHER AMMONIUM TRANSPORTER 5 493 - -
Cme05g00647 500 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme05g00647 500 SUPERFAMILY Ammonium transporter 46 453 - -
Cme05g00647 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 493 - -
Cme05g00647 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00647 Cme-Chr5:6930540 Cme06g00438 Cme-Chr6:2781414 0 dispersed
Cme03g01649 Cme-Chr3:25286941 Cme05g00647 Cme-Chr5:6930540 2.35E-25 transposed
Cme04g02747 Cme-Chr4:32753758 Cme05g00647 Cme-Chr5:6930540 3.03E-24 transposed
Cme04g00939 Cme-Chr4:12629376 Cme05g00647 Cme-Chr5:6930540 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00647 K03320 - csv:101212168 957.207