Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00660 ATGGCGGCACTTAGTAAATGGTCTTCTCTGTCTCTCTTTGCCCTTGCATTGCTGTTCTTCCTAACAATCGCTCTCGTTCGCAAAGAAGAGACCTCCAAAATTAGGACTGTGTCTGCGGCGGAATTTCAGAGCTCTAGCGACTCATCAATGGCGACTAGGCGGTCGTTTCTCATTTTCCCCATCTCGTGCCGACCAATCGTTCCGCCTCTAAATTCTCTCTCTATACAAAAGCACTTTTTCAAACGGGTGGAGAATTATGATGTGGAGCAAGAACTCAACAATGAACATGCTGTGGACAATCCTGATGAGATTGCTGCTTCGGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGGAATCCCATTGACGACTGCTGGCGTTGCGACTCCAATTGGCACCGTAACCGTAAACGCCTTGCGGAATGTGGCATTGGATTTGGACGGAATGCTATTGGTGGACGTGATGGCCGTTTCTATGTTGTCACTGATTCGAGTGACAACGATCCTGTGAACCCGAAGCCAGGGACACTTCGTCATGCTGTTATTCAAGAGAAACCTCTTTGGATCGTGTTCAAAAGGGACATGGTGATTCGATTGAAACAGGAACTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACACATTGCTAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAACCCACAGGGAATGCCATGGTGAGAAGCTCTCCATCTCATTTCGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGTTCAAGCCATATATGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTTATGGGCTCAACTGCAATCACGATCTCCAACAATCACTTCACTCATCATAACGAGGTGATGCTTCTAGGCCACAGTGATTCCTACACGAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAAGGACTCATTCAAAGAATGCCAAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAATCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACAAAGCGAGTCGAAACACCGGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGCTGAATGGAGCCTATTTCACTCCATCAGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCTTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCGGCTGGTTCACTCCCTTGCCGCCGAGGCCATCCATGCTAG 1431 47.1 MAALSKWSSLSLFALALLFFLTIALVRKEETSKIRTVSAAEFQSSSDSSMATRRSFLIFPISCRPIVPPLNSLSIQKHFFKRVENYDVEQELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIRLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7209670 7213832 + MELO3C023087.2.1 Cme05g00660 327723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00660 476 Pfam Pectate lyase 216 391 IPR002022 -
Cme05g00660 476 Gene3D - 129 469 IPR012334 -
Cme05g00660 476 PANTHER PECTATE LYASE 84 473 - -
Cme05g00660 476 PANTHER PECTATE LYASE 18-RELATED 84 473 IPR045032 GO:0030570
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 176 201 IPR018082 -
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 276 297 IPR018082 -
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 212 228 IPR018082 -
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 354 373 IPR018082 -
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 418 442 IPR018082 -
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 152 169 IPR018082 -
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 376 395 IPR018082 -
Cme05g00660 476 PRINTS Pollen allergen Amb family signature 447 470 IPR018082 -
Cme05g00660 476 SUPERFAMILY Pectin lyase-like 106 470 IPR011050 -
Cme05g00660 476 SMART amb_all 204 399 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02206 Cme-Chr3:28973335 Cme05g00660 Cme-Chr5:7209670 2.26E-153 dispersed
Cme04g00888 Cme-Chr4:11688753 Cme05g00660 Cme-Chr5:7209670 0 dispersed
Cme05g00660 Cme-Chr5:7209670 Cme12g01634 Cme-Chr12:23484887 0 dispersed
Cme05g00660 Cme-Chr5:7209670 Cme06g00410 Cme-Chr6:2629054 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00660 K01728 - csv:101217580 851.277