Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00693 ATGGACGCAGCAGCACCACAGCTCGTCTCCTGTCGAATCGACACAATTTGCCGCCGAACACTACCATCGCGCCTTCCATTTCCTAAAACTACCGTCAGAGCTCGCAAGCGCCCCGGTAAAGTTCTTGCTGTTGCGACTGAGCCGAAACCGACGAATTCTTCTCCAAAGAAATCCGTTAATGGATCAGCTAGGTCTCCCTCGGCTCCTAAACCTCTCAACGGAGTTTCCACTAAAATTGGAGATGTTTCGAAGGAAATTAAACGAGTCCGAGCCCAGATGGAAGAAAATGAAGAGTTGGCAATACTCATGAGAGGACTACGGGGACAGAATTTAAAAGATTCCCTTTTTGCAGAGGATAACGTTGAGCTCCGTCTTGTTGAGGTAGATGAGAGCAGTGAGTTCTTGCCTTTGGCTTATGATCCTGCAAGCATATCTGCATATTGGGGGAAAAGACCACGTGCTGTAGCAACTCGAATTGTTCAGTTGCTTTCTGTCGCTGGAGGATTTCTCTCACATATTGCCTGGGATATCATAAACAAGAAAACTAAGGAGAATGAAGTTGAAAGAGCCATAGAATTAAGGGAGATCGTGACCTCATTGGGTCCAGCATATATTAAGCTAGGACAAGCTCTGAGTATTCGACCGGATATACTGTCACCTGTTGCAATGACTGAGCTGCAAAAGCTTTGTGATAAGGTTCCTTCATTTCCTGATGATGTTGCTATGGCTCTCATTGAAGAGGAACTTGGTCAACCATGGCAGAACATCTATTCTGAACTTTCTCCTTCCCCAATTGCTGCTGCTTCTTTAGGACAGGTATATAAGGGTCGTTTAAAAGAAAATGGAGATCTGGTGGCTGTTAAAGTTCAGAGGCCTTTTGTTCTAGAGACTGTGACTATTGATTTATTTATCATACGAAATTTGGGCTTGGTTCTTCGGAGGTTTCCACAGATTTCTCTAGATGTGGTTGGCCTGGTAGATGAATGGGCAGCTCGCTTTTTTGAGGAGTTAGATTATGTGAATGAAGGTGAAAATGGAACACGCTTTGCTGAGGAGATGAGAAAGGATCTTCCTCAGGTGGTTGTTCCAACAACATACCAAAAATATACTTCAAGGAAAGTCCTCACAACAGGATGGATAGACGGAGAGAAGCTATCCCAAAGCACGGAAAGTGATGTTGGGGAACTTGTGAATGTGGGAGTCATATGCTACCTAAAGCAGTTACTTGACACTGGATTCTTCCATGCTGACCCTCATCCTGGGAATTTGATCCGCACGCCAGATGGGAAGTTGGCCATACTTGACTTCGGTCTAGTCACGAAGTTAACTGATGATCAAAAGTATGGAATGATTGAAGCAATTGCACATCTCATTCATCGAGATTATTCAGCTATAGTCAAAGACTTTGTTAAGCTTGGTTTTATCCCAGAGGGTGTTAATTTGGAACCGATCTTGCCAGTCCTAGCAAAGGTTTTCGATCAGGCTCTTGAAGGTGGAGGTGCTAAGAACATCAACTTCCAGGAACTGGCTTCAGATTTAGCTCAGATAACATTTGACTATCCATTTCGGATACCTCCATATTTTGCTCTTATAATTAGGGCAATTGGGGTTCTAGAAGGAATAGCTTTAGTGGGAAACTCTGATTTTGCCATTGTCGATGAGGCCTATCCTTATATTGCACAGAGACTTCTGACTGATGAGTCTCCAAGGTTAAGGAATGCCTTACGATACACGATCTATGGGAAGTCTGGGGTATTTGATGCTGAGAGATTCATTGATGTTATGCAAGCCTTCGAGAACTTCATAACTGCTGCTAAAAGTGGGGGTGGAGAGGGTCTTAAAGGGGATATGGCCGAGCTTGGTGGTCTGGGAACCCGAACAGCATCTCCCGTTCCTCAATTTCTTCCCACTCCCCGTGAATTCCAGCAAAAGAAACCAATTGAGACAAGGGCTTCCTTAGCCTTTCTGCTTTCTGATAGAGGGAACTTTTTTCGAGAATTTCTTCTTGATGAGATTGTGAAGGGCATTGATGCAATCACGAGGGAACAGTTAGTACGGCTAATGTCAATCTTTGGGCTTAGAAATACTACACCAATTTTTAACATGGTTCCTTCCATTGGACCATTCAAGCCTGTTGCATTCCTACCCTCGATAACAGAAGAAGACAGGGTCATACTAAATAATGTTCAAAAGATTCTTGAGTTCTTAACGGCAGGAAGTTCAATCTCAACAAAATCGAAAGAGGGTCTTGATGCTGTTCGAGTTATTCGAGAGCTTCTTCCAGTTTTGCCAGGCATGTCTGCCACAGTTCTTCCTGAGGTGGTCAGTCGATTATCATCCCGAGTAATTGCCCGGTTAATTCGCGATACAATGTTATGA 2379 43.88 MDAAAPQLVSCRIDTICRRTLPSRLPFPKTTVRARKRPGKVLAVATEPKPTNSSPKKSVNGSARSPSAPKPLNGVSTKIGDVSKEIKRVRAQMEENEELAILMRGLRGQNLKDSLFAEDNVELRLVEVDESSEFLPLAYDPASISAYWGKRPRAVATRIVQLLSVAGGFLSHIAWDIINKKTKENEVERAIELREIVTSLGPAYIKLGQALSIRPDILSPVAMTELQKLCDKVPSFPDDVAMALIEEELGQPWQNIYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLVLRRFPQISLDVVGLVDEWAARFFEELDYVNEGENGTRFAEEMRKDLPQVVVPTTYQKYTSRKVLTTGWIDGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYSAIVKDFVKLGFIPEGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNSDFAIVDEAYPYIAQRLLTDESPRLRNALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEGLKGDMAELGGLGTRTASPVPQFLPTPREFQQKKPIETRASLAFLLSDRGNFFREFLLDEIVKGIDAITREQLVRLMSIFGLRNTTPIFNMVPSIGPFKPVAFLPSITEEDRVILNNVQKILEFLTAGSSISTKSKEGLDAVRVIRELLPVLPGMSATVLPEVVSRLSSRVIARLIRDTML 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7998380 8007134 - MELO3C020465.2.1 Cme05g00693 327756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00693 792 ProSiteProfiles Protein kinase domain profile. 259 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00693 792 Coils Coil 79 99 - -
Cme05g00693 792 MobiDBLite consensus disorder prediction 47 72 - -
Cme05g00693 792 CDD ABC1_ADCK3-like 228 469 - -
Cme05g00693 792 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 32 791 - -
Cme05g00693 792 SUPERFAMILY Protein kinase-like (PK-like) 231 465 IPR011009 -
Cme05g00693 792 MobiDBLite consensus disorder prediction 28 77 - -
Cme05g00693 792 PANTHER PROTEIN KINASE-LIKE DOMAIN 32 791 - -
Cme05g00693 792 Pfam ABC1 atypical kinase-like domain 228 467 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00693 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101212546 1499.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00008 Cme-Chr2:118083 Cme05g00693 Cme-Chr5:7998380 8.87E-120 dispersed
Cme03g01558 Cme-Chr3:24672418 Cme05g00693 Cme-Chr5:7998380 6.10E-100 dispersed
Cme03g01688 Cme-Chr3:25590683 Cme05g00693 Cme-Chr5:7998380 1.26E-80 dispersed
Cme05g00693 Cme-Chr5:7998380 Cme10g00063 Cme-Chr10:474370 4.15E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00693 Cme_Chr05 FPKM 48.394947 49.334507 22.156122 20.935917 55.073647 52.136456 58.205963 20.753984 20.18166 20.220669