Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00712 ATGCAGCTGAACCGTCTCTGTTTACTTCTACCGGCGGATTTCGATGAAGTCCAGCCACTTGATCGTGAAGATCACCTACAAAAACCCAACCAGAATACCAACAAACAACAAAACAAACATCACAATCGAGATTGTTGGTCTCAATTTCAAACCTTTCTACGAGATTGTCTCTTCAAATTCCACAGCCTGAAATGGGTTAATTCTTGTTGCTACGGGGGTAGACCCAGAAAACCGACACCGTTTGATTTTCACGACACTGACGGAGTACAGCTTTCGGAGAAAGTCGGAGGCGACAATCCCAGAATCTTTAGTTTTGCAGAGCTCTATATAGGGACCAAAGGATTCAGTGCAGAGGAAATTCTCGGCAGCGGTGGATTTGGGAAGGTTTACAGAGCATACTTGCCTAGTGATGGAACTGTGGTGGCTGTGAAATGTTTGGCTGAAAAAGGGGAGAAGTTTGAGAAGACCTTTGTGGCGGAGCTGGTGGCGGTGGCTCATCTCCGGCATCGGAATCTTGTTCGGCTTCGTGGTTGGTGTGTTCATGAAGACCAACTGTTTCTTGTTTATGATTATATGCCCAACCGAAGTTTAGATAGAGCACTTTTCCGGCGGATAGAGAATGGCGGGACGGATCTGAGTTGGAAACAGAGGATGAAGATTGTGAGTGGTTTGGCTGCCGCTCTCTTCTATCTTCATGAGCAATTAGAGACTCAAATCATTCATAGAGATGTTAAAACCAGCAACGTGATGCTTGATTCCAATTACAATGCTAGGCTTGGTGATTTTGGGTTGGCAAGGTGGTTGGAACATGAATTGGAATACCAGAACAGGGTGCCGTCGATGGGTCACCACCAGTTCCGGCTCGTGGAAACCACCAAAATTGGCGGCACAATTGGGTATCTCCCACCGGAGAGTTTTCAGAGAAGAAGCATTGCCACTGCAAAATCTGATGTTTTCAGCTTTGGTATTGTGGTTCTCGAGGTGGTCTCTGGTCGGCGGGCGGTGGACCTTACATGTCCTGATGATCAGATTGTGTTGCTTGATTGGATTCGAAAACTCTCGGACGACGGCACGCTGCTGCTCTGCGGTGATAACCGGCTGCCAGATGGGTCTTATAATCTGATTGAAATGGAGCGTTTGATCCATTTGGGTCTCCTCTGTACGCTCCAGAGCCCACAGTACAGACCAAGTATGAAATGGGTTGTGGAAGCTCTTTCAGGTGGTATGATGGGGAATTTGCCGGCTCTTCCATCGTTTCAGTCTCATCCTCAATACATTTCTCTATCTTCCCCTACCGATGGAAACACAACCAGAAGCACTAGCAGTAGCAGAACCACAACAACAAGATCAGATGCAACAACAATTACAGTTAGTTCCTCAGATTTCGTTTCAGCCAATGGAGAAACCATATATATGACTGCTGAGAATGGGAACAATTACACCAACTCTTCTGATAGGTTTCTTGACAGATCAAAAACCATTCAAATGATTGAAACCCCAAGAGTAATATCATTCAAGGAGATCATTTCGGCCACCAATAACTTCTCTGACTCGCAACGGGTGGCAGAGCTCGACTTCGGAACTGCCTACCATGGCTTCCTTGACAGCAGCCACCATGTTCTAGTGAAGCGGCTTGGAATGAAGACTTGCCCTGCTTTGCGGGAAAGATTCTCAAACGAACTCCTTAACTTGGGCCGGCTTCGCCATAGAAATTTAATACAGCTTCGAGGGTGGTGCACAGAGCAAGGAGAGATGCTTGTGGTTTATGATTATTCAGCAGACCGTCTCTTGAGCCACCTGCTTTTCCACCAAGACAATAGAGCCTTGCAATGGTGTCATAGATACAACATTATCAAATCTCTGGCTTCTGCAATTCTTTATCTTCATGAGGAATGGGATGAACAAGTCATCCACAGGAACATCACCTCATCGGCTGTCATTCTTGATCTCGATCTTAACCCAAGGCTGAGTTCTTTTGCCCTTGCAGAGTTCCTAACAAGAAATGAGCACGGAAATCATCATGTAACCATAGATAAAAACAAATCAGTTCGTGGGATTTTCGGGTACATGTCACCAGAGTATTTAGACTCCGGGGATGCGGTAGCGACAGCTGATATATACAGCTTTGGTGTGGTGGTGCTAGAGGTGATCACTGGGCAAATGGCGGTAGATTTTCGACGGCCAGAAGTATTGCTTGTGAGGAAAGTTCATGAATTCCTCGCCCGAAAAAGGCCACTGGAAGAGCTTGCTGATATAAGGATGAATGGAGAATACAACCACAAAGAACTGATGAGACTGTTGAGATTAGGAATCGCCTGTACTCACTCAAACCCAGATTCACGACCAAAAATGAGGCAGATAGTTAAAATATTAGATGGAAATGACGAATGCTTCACTATAGAAGAAAAAATAGAGAGCCTAGAAGGTTGGAAACAGAGAAATGCAACTTCTTTGTCACTGGTTAAGAGGATCCAAGCTCTGGGAATTCAGTGA 2493 45.57 MQLNRLCLLLPADFDEVQPLDREDHLQKPNQNTNKQQNKHHNRDCWSQFQTFLRDCLFKFHSLKWVNSCCYGGRPRKPTPFDFHDTDGVQLSEKVGGDNPRIFSFAELYIGTKGFSAEEILGSGGFGKVYRAYLPSDGTVVAVKCLAEKGEKFEKTFVAELVAVAHLRHRNLVRLRGWCVHEDQLFLVYDYMPNRSLDRALFRRIENGGTDLSWKQRMKIVSGLAAALFYLHEQLETQIIHRDVKTSNVMLDSNYNARLGDFGLARWLEHELEYQNRVPSMGHHQFRLVETTKIGGTIGYLPPESFQRRSIATAKSDVFSFGIVVLEVVSGRRAVDLTCPDDQIVLLDWIRKLSDDGTLLLCGDNRLPDGSYNLIEMERLIHLGLLCTLQSPQYRPSMKWVVEALSGGMMGNLPALPSFQSHPQYISLSSPTDGNTTRSTSSSRTTTTRSDATTITVSSSDFVSANGETIYMTAENGNNYTNSSDRFLDRSKTIQMIETPRVISFKEIISATNNFSDSQRVAELDFGTAYHGFLDSSHHVLVKRLGMKTCPALRERFSNELLNLGRLRHRNLIQLRGWCTEQGEMLVVYDYSADRLLSHLLFHQDNRALQWCHRYNIIKSLASAILYLHEEWDEQVIHRNITSSAVILDLDLNPRLSSFALAEFLTRNEHGNHHVTIDKNKSVRGIFGYMSPEYLDSGDAVATADIYSFGVVVLEVITGQMAVDFRRPEVLLVRKVHEFLARKRPLEELADIRMNGEYNHKELMRLLRLGIACTHSNPDSRPKMRQIVKILDGNDECFTIEEKIESLEGWKQRNATSLSLVKRIQALGIQ 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8316206 8318759 - MELO3C020450.2.1 Cme05g00712 327775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00712 830 Gene3D Phosphorylase Kinase; domain 1 478 591 - -
Cme05g00712 830 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 829 - -
Cme05g00712 830 CDD STKc_IRAK 121 405 - -
Cme05g00712 830 PANTHER - 1 829 - -
Cme05g00712 830 ProSiteProfiles Protein kinase domain profile. 115 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00712 830 SUPERFAMILY Protein kinase-like (PK-like) 99 413 IPR011009 -
Cme05g00712 830 SMART serkin_6 115 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00712 830 SUPERFAMILY Protein kinase-like (PK-like) 490 791 IPR011009 -
Cme05g00712 830 MobiDBLite consensus disorder prediction 424 451 - -
Cme05g00712 830 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Cme05g00712 830 Gene3D Transferase(Phosphotransferase) domain 1 192 410 - -
Cme05g00712 830 Gene3D Transferase(Phosphotransferase) domain 1 594 808 - -
Cme05g00712 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cme05g00712 830 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Cme05g00712 830 Gene3D Phosphorylase Kinase; domain 1 87 191 - -
Cme05g00712 830 ProSiteProfiles Protein kinase domain profile. 515 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00712 830 Pfam Protein kinase domain 116 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00712 - - - csv:101205657 1583.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00712 Cme-Chr5:8316206 Cme04g02749 Cme-Chr4:32763827 4.91E-63 dispersed
Cme05g00712 Cme-Chr5:8316206 Cme04g02643 Cme-Chr4:32182873 3.53E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64892 PF07714 PK_Tyr_Ser-Thr 1.30E-27 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00712 Cme_Chr05 FPKM 19.259809 20.356123 10.268499 10.479137 67.766495 65.115013 69.072166 4.994804 4.925062 3.895862