Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00713 ATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGGCCTTACCAAAAGCTGTCATAGCAGTGATTGCTGTTGCTGCCCATCAAGGATTTAGTCTACATGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTTAATTTTCCTTCGACGGCCACCAACGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCTGATTCCTCTCCATGCCCAAGTGCATCGGCAATTCCTACGCAAGGGGTGACTTCTATGTTGCCACCATCAGATAATCAGGCAGCATCCCACCAGCCACGGAGCATAGCGACTGAACTTCCAGCAGTTTCTCTGAGTTCGACATCACCAGCGGGAGGGTTTCCAGTGATTGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGCGTGCTTTATCAGGCTCCTGAGCAACCTTCACAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTTCCACCCCCACCACACCAAATGCTCATCGCCGTCGTCGTAGGAAGAAATCTGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGTTACAACTTCTTTTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGCGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATATAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGGTGACAAAAATGAAGAAACCGAGGGCGGCGAGTCTCAAACACCAGATCATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTACAAAACAGAAGAGAAGGACGAGGACGAGGAGGACGACGAAGAGGATGAGGAGGAGGATGACTCAGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGTGAGACGAGAACAGGAGTAGAGAATGTTAGAAAAGAGAGTAGCACAGTTGGTGATAAGAAAGAAGTTTTAGCTGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGGAAGAACCAGAACCAACAACAGCGGCCATTAGAGAAGATTAA 1362 45.74 MASTSFAGGKQLPVIEVASNCVPYPPPQTTALPKAVIAVIAVAAHQGFSLHVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPTQGVTSMLPPSDNQAASHQPRSIATELPAVSLSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQPQVLQPVGAFAKDGSTPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDHDTSYVEGDSGEYKTEEKDEDEEDDEEDEEEDDSEEDASPQGIGNVDVNILVEEEQCETRTGVENVRKESSTVGDKKEVLAGDSVMVEVEAKEEPEPTTAAIRED 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8358680 8361813 + MELO3C020449.2.1 Cme05g00713 327776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00713 453 MobiDBLite consensus disorder prediction 362 386 - -
Cme05g00713 453 SMART hmgende2 236 305 IPR009071 -
Cme05g00713 453 Gene3D High mobility group box domain 221 316 IPR036910 -
Cme05g00713 453 CDD HMGB-UBF_HMG-box 237 300 - -
Cme05g00713 453 MobiDBLite consensus disorder prediction 331 345 - -
Cme05g00713 453 Coils Coil 286 306 - -
Cme05g00713 453 SUPERFAMILY ARID-like 50 106 IPR036431 GO:0003677
Cme05g00713 453 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 45 376 - -
Cme05g00713 453 SUPERFAMILY HMG-box 230 309 IPR036910 -
Cme05g00713 453 MobiDBLite consensus disorder prediction 205 244 - -
Cme05g00713 453 Gene3D - 39 98 IPR036431 GO:0003677
Cme05g00713 453 ProSiteProfiles ARID domain profile. 1 94 IPR001606 GO:0003677
Cme05g00713 453 MobiDBLite consensus disorder prediction 217 231 - -
Cme05g00713 453 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 237 304 IPR009071 -
Cme05g00713 453 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 45 376 - -
Cme05g00713 453 MobiDBLite consensus disorder prediction 318 397 - -
Cme05g00713 453 Pfam HMG (high mobility group) box 237 304 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01961 Cme-Chr4:27220060 Cme05g00713 Cme-Chr5:8358680 9.92E-10 dispersed
Cme05g00713 Cme-Chr5:8358680 Cme07g00083 Cme-Chr7:521716 2.61E-62 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41344 PF00505 HMG_box 1.60E-13 CL0114 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00713 - - csv:101205891 759.985