Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00713 ATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGGCCTTACCAAAAGCTGTCATAGCAGTGATTGCTGTTGCTGCCCATCAAGGATTTAGTCTACATGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTTAATTTTCCTTCGACGGCCACCAACGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCTGATTCCTCTCCATGCCCAAGTGCATCGGCAATTCCTACGCAAGGGGTGACTTCTATGTTGCCACCATCAGATAATCAGGCAGCATCCCACCAGCCACGGAGCATAGCGACTGAACTTCCAGCAGTTTCTCTGAGTTCGACATCACCAGCGGGAGGGTTTCCAGTGATTGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGCGTGCTTTATCAGGCTCCTGAGCAACCTTCACAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTTCCACCCCCACCACACCAAATGCTCATCGCCGTCGTCGTAGGAAGAAATCTGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGTTACAACTTCTTTTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGCGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATATAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGGTGACAAAAATGAAGAAACCGAGGGCGGCGAGTCTCAAACACCAGATCATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTACAAAACAGAAGAGAAGGACGAGGACGAGGAGGACGACGAAGAGGATGAGGAGGAGGATGACTCAGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGTGAGACGAGAACAGGAGTAGAGAATGTTAGAAAAGAGAGTAGCACAGTTGGTGATAAGAAAGAAGTTTTAGCTGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGGAAGAACCAGAACCAACAACAGCGGCCATTAGAGAAGATTAA 1362 45.74 MASTSFAGGKQLPVIEVASNCVPYPPPQTTALPKAVIAVIAVAAHQGFSLHVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPTQGVTSMLPPSDNQAASHQPRSIATELPAVSLSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQPQVLQPVGAFAKDGSTPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDHDTSYVEGDSGEYKTEEKDEDEEDDEEDEEEDDSEEDASPQGIGNVDVNILVEEEQCETRTGVENVRKESSTVGDKKEVLAGDSVMVEVEAKEEPEPTTAAIRED 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8358680 8361813 + MELO3C020449.2.1 Cme05g00713 327776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00713 453 MobiDBLite consensus disorder prediction 362 386 - -
Cme05g00713 453 SMART hmgende2 236 305 IPR009071 -
Cme05g00713 453 Gene3D High mobility group box domain 221 316 IPR036910 -
Cme05g00713 453 CDD HMGB-UBF_HMG-box 237 300 - -
Cme05g00713 453 MobiDBLite consensus disorder prediction 331 345 - -
Cme05g00713 453 Coils Coil 286 306 - -
Cme05g00713 453 SUPERFAMILY ARID-like 50 106 IPR036431 GO:0003677
Cme05g00713 453 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 45 376 - -
Cme05g00713 453 SUPERFAMILY HMG-box 230 309 IPR036910 -
Cme05g00713 453 MobiDBLite consensus disorder prediction 205 244 - -
Cme05g00713 453 Gene3D - 39 98 IPR036431 GO:0003677
Cme05g00713 453 ProSiteProfiles ARID domain profile. 1 94 IPR001606 GO:0003677
Cme05g00713 453 MobiDBLite consensus disorder prediction 217 231 - -
Cme05g00713 453 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 237 304 IPR009071 -
Cme05g00713 453 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 45 376 - -
Cme05g00713 453 MobiDBLite consensus disorder prediction 318 397 - -
Cme05g00713 453 Pfam HMG (high mobility group) box 237 304 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00713 - - - csv:101205891 759.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01961 Cme-Chr4:27220060 Cme05g00713 Cme-Chr5:8358680 9.92E-10 dispersed
Cme05g00713 Cme-Chr5:8358680 Cme07g00083 Cme-Chr7:521716 2.61E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00713 . 52 334 ARID Transcription Factor Family AT1G04880 56.0 8.5e-77 284.6
Cme06g02319 . 208 478 ARID Transcription Factor Family AT1G20910 61.4 1.8e-91 333.2
Cme07g00083 . 99 393 ARID Transcription Factor Family AT1G76110 68.2 1.9e-113 406.0
Cme06g02319 . 187 508 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cme04g01382 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.6 3.7e-266 914.4
Cme01g02766 CCT,ECH 87 810 ARID Transcription Factor Family AT3G43240 54.3 1.8e-233 805.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41344 PF00505 HMG_box 1.60E-13 CL0114 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g00713 Cme_Chr05 FPKM 11.849722 12.464148 8.645583 9.07206 20.67605 19.37772 21.31543 14.122574 13.770078 13.367878