Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00722 ATGGGTAAGGAAAAGACTCATATCAACATCGTGGTTATTGGCCATGTCGACTCTGGGAAGTCGACCACCACTGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCGGAGCGTGAACGTGGTATTACCATTGACATTGCCCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATCGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACCACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACTCGTGAGCATGCTCTTCTCGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGAGGGCCACAGTCATAGTGAAGATGCAATGTGGCTATTTGCTGGCATCCATGGACATGGATGCCACCACTCCCAAATACTCCAAGGCAAGGTACGATGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGACAAAATCCCCTTCGTTCCAATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTTCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGACGTGTTGAAACTGGTATCCTCAAGCCTGGTATGGTTGTTACGTTCGGACCAACTGGACTGACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTCCCAGAAGCTTTGCCCGGTGACAATGTTGGATTCAACGTCAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCCTCGAACTCCAAGGACGACCCTGCCAAGGAAGCTGCCAACTTCACATCTCAGGTTATCATCATGAACCACCCCGGTCAGATCGGTAATGGTTATGCTCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTCGCTGAGATCCTCACCAAAATCGATCGTCGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGTATGGTTAAGATGGTTCCAACCAAGCCCATGGTTGTGGAGACCTTCTCTTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCTGTTGGTGTTATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAGTCCGCCGTGAAGAAGAAATAA 1398 49.0 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKRATVIVKMQCGYLLASMDMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8457834 8460822 - MELO3C020441.2.1 Cme05g00722 327785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00722 465 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cme05g00722 465 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cme05g00722 465 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cme05g00722 465 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cme05g00722 465 SUPERFAMILY Translation proteins 249 339 IPR009000 -
Cme05g00722 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 267 IPR027417 -
Cme05g00722 465 CDD EF1_alpha_III 341 444 - -
Cme05g00722 465 Pfam Elongation factor Tu C-terminal domain 340 447 IPR004160 -
Cme05g00722 465 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 464 - -
Cme05g00722 465 Gene3D Translation factors 341 448 - -
Cme05g00722 465 Pfam Elongation factor Tu domain 2 266 331 IPR004161 GO:0005525
Cme05g00722 465 CDD EF1_alpha 9 245 - -
Cme05g00722 465 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cme05g00722 465 Gene3D Translation factors 247 334 - -
Cme05g00722 465 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 344 447 IPR009001 -
Cme05g00722 465 CDD EF1_alpha_II 248 338 - -
Cme05g00722 465 Pfam Elongation factor Tu GTP binding domain 5 239 IPR000795 GO:0003924|GO:0005525
Cme05g00722 465 Gene3D - 1 244 IPR027417 -
Cme05g00722 465 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 248 IPR000795 GO:0003924|GO:0005525
Cme05g00722 465 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 451 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cme05g00722 465 PANTHER TRANSLATION FACTOR 1 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g02012 Cme-Chr2:26325934 Cme05g00722 Cme-Chr5:8457834 1.38E-44 dispersed
Cme05g00722 Cme-Chr5:8457834 Cme11g01780 Cme-Chr11:25980607 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00722 K03231 - csv:101215193 877.47