Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00723 ATGGCCGGCCTATCGCTCCAGTGCGGAGATTGTGGCGCACTCTTCAAATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAAGCAGTGCTCAATCTCGTCTGCACTGCTTGCGGCAAGCCCTGCCGGTCTAAGACGGAAAGTGATTTGCATACGAAAAGGACTGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCAAAACCAATAAGTTTGGAGGCCCGAAAGGTAGATGTGGAAGCGGAAGATGGCGGAGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCTGAGGTGAACAAGAATATATTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACGAGCAACCCGTGCACTCTTTTATTCTGGTAATGCTAGTCTTGAGGCAGCAGTCAATTGGGTAGTTGAACATGAGAATGATCCAGAGATAGATCAGATGCCTTTGGTTCCCAAGGACACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACACCCGAGCAATTGAAAGCAAAACAGCAGGAGCTAAGGGAACGGGCTAGGAAGAAAAAAGAGGAGGAAGAGAAGATAGCGGAAAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGGAAGGAGCTCTTAGAAGCGAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCCGAAAAAGAAGAAGAGAAAAGAGCCAGGGAGAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTCCGGCACCTGTTGTTGAAGAGAAAAAGATGTCTTTACCAGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGACGATGCTAAAGTGAAGAGAGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGTGAAAAATCCTGATGAAGAGAAATTCAGAAAAATAAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTACACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTCGAGAAAATCGAAGGTGGCGAGTTCTTATTTCTGCCCAGAAACAAGGTTGACAGGGCAGTGCTAAATACAGCTGGCTCTGAGCTCGACTCTGCTATTAAAAATCCTTTCTTTGGCGTCCTCTAA 1236 45.71 MAGLSLQCGDCGALFKSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEARKVDVEAEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTARATRALFYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPPAPVVEEKKMSLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQDRVGTLRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNTAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8467371 8479635 + MELO3C020440.2.1 Cme05g00723 327786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00723 411 SMART PGNneu 321 384 - -
Cme05g00723 411 MobiDBLite consensus disorder prediction 252 270 - -
Cme05g00723 411 Gene3D - 303 401 - -
Cme05g00723 411 Pfam UBA/TS-N domain 116 147 IPR015940 -
Cme05g00723 411 Pfam PUB domain 318 389 IPR018997 -
Cme05g00723 411 Coils Coil 181 215 - -
Cme05g00723 411 CDD PUB_UBA_plant 305 411 - -
Cme05g00723 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515
Cme05g00723 411 MobiDBLite consensus disorder prediction 167 208 - -
Cme05g00723 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Cme05g00723 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Cme05g00723 411 Gene3D - 113 157 - -
Cme05g00723 411 MobiDBLite consensus disorder prediction 252 298 - -
Cme05g00723 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cme05g00723 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cme05g00723 411 SMART uba_6 112 150 IPR015940 -
Cme05g00723 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Cme05g00723 411 Coils Coil 224 261 - -
Cme05g00723 411 CDD UBA_PUB_plant 110 158 - -
Cme05g00723 411 MobiDBLite consensus disorder prediction 183 208 - -
Cme05g00723 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00723 Cme-Chr5:8467371 Cme05g01425 Cme-Chr5:23622431 1.67E-99 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00723 K24348 - csv:101215434 701.049