Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00742 ATGAAGGAGGAAGGAGATTGTTTTGAAGACCAGATTGTAATGCAACAAAACGGCAACGTTTTTGTAGCCGGAGGAGGAGGGTCGGATTTTTCTGAGGTTTCTCCCTTGATGTTTCCCAGCCATCAAGTCCCTGGGTTCAACCCCTTTTTATTTAATCCGACGACACTGGATCAGCACGACCCGTTTAATCCGTCGCCGCCGCAGCTGCCCAGCTTCTTCAACAGAAGAAATAATAATATTTCATTCCCCTACTACGATAATAATAATGTTGGTTGTGCCCCATTTGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACCGACAAGGCATCATTGCTAGCAGAAGTAATCCAACACGTGAAAGAGCTTAAACGACAGACGATGTTGATAGCCGATGCAAGTTTGCTGCCGACCGAAGTCGACGAGCTATCAGTGGACGTTGATGCCTCGGACGAGGACGGGAAGTTTGTAATCAAAGCCTCGTTTTGTTGCGAGGACAGGTCTGATCTTTTGCCACAAATCACCAAAACCCTAAAATCCCTCCACTTGAGAACTTTAAAAGCGGAGATCACAACATTCGGCGGTCGCGTAAGAAACGTATTATTCATCACGGCCGACAACGACTCCTCCAACGACCAGCAACAAGATCATAATCCTCAACACCAATACAGCATCAGTTCCATTCAGGAAGCCCTAAAGGGAATGATGGAGAAGGTTTGTCGCGAAGAGCAGTCGTCAGGCAGCATCAAAAGACAAAGGACCAACAATCACAACAACATTAATATCATCCAAAACAGGTCTCTCTAG 921 45.6 MKEEGDCFEDQIVMQQNGNVFVAGGGGSDFSEVSPLMFPSHQVPGFNPFLFNPTTLDQHDPFNPSPPQLPSFFNRRNNNISFPYYDNNNVGCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTMLIADASLLPTEVDELSVDVDASDEDGKFVIKASFCCEDRSDLLPQITKTLKSLHLRTLKAEITTFGGRVRNVLFITADNDSSNDQQQDHNPQHQYSISSIQEALKGMMEKVCREEQSSGSIKRQRTNNHNNINIIQNRSL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9047899 9049714 + MELO3C020417.2.1 Cme05g00742 327805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00742 306 Pfam Helix-loop-helix DNA-binding domain 115 161 IPR011598 GO:0046983
Cme05g00742 306 PANTHER TRANSCRIPTION FACTOR BHLH30 94 298 IPR045847 GO:0003700|GO:0006355
Cme05g00742 306 Gene3D - 107 167 IPR036638 GO:0046983
Cme05g00742 306 PANTHER TRANSCRIPTION FACTOR BHLH30 94 298 - -
Cme05g00742 306 SMART finulus 118 167 IPR011598 GO:0046983
Cme05g00742 306 MobiDBLite consensus disorder prediction 287 306 - -
Cme05g00742 306 MobiDBLite consensus disorder prediction 281 306 - -
Cme05g00742 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 165 IPR036638 GO:0046983
Cme05g00742 306 CDD bHLH_AtAIG1_like 107 186 - -
Cme05g00742 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01820 Cme-Chr4:25939103 Cme05g00742 Cme-Chr5:9047899 8.07E-49 dispersed
Cme05g00742 Cme-Chr5:9047899 Cme10g00294 Cme-Chr10:1921317 4.89E-78 dispersed
Cme05g00742 Cme-Chr5:9047899 Cme12g01961 Cme-Chr12:25490076 6.04E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41346 PF00010 HLH 2.00E-12 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00742 - - vvi:100250878 307.375