Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00939 ATGAAGCTTCATTTTCTGTTTTTAGTTCCCTTTCTCTCACTCCTCTCCTCCGCCGCCGCCTGGATTAACGCTCACGCCACCTTTTACGGCGGCAGCGATGCTTCCGGCACAATGGGTGGAGCTTGCGGGTATGGGAATCTTTACAGTGAAGGATACGGGAGCAACACTGCGGCAATTAGCACTGCACTTTTCAACAATGGGTTGAGTTGTGGGAGTTGTTATGAGATTAAGTGCGTTGACGATCCTAAATGGTGCCTACCTGGCTCTGTTTTGGTCACTGCCACTAACTTCTGTCCCCCTAATAATGCTCTTCCTAATAACGCCGGTGGTTGGTGTAACCCTCCTCTCCACCACTTTGATCTTTCCCAGTCTGTTTTTCTCCGTATTGCCCAATACCACGCCGGTATCGTCCCCGTCCTCTATCGCAGGGCTCCATGTAAGAGGAAGGGAGGAGTACGGTTCACAATAAACGGCCATTCATACTTCAACTTAGTGTTAATAACCAACGTGGGAGGCGTAGGGGATGTTCATGCTGTGTCCGTAAGAGGCTCTAGCAGTGGGTGGCAACCAATGTCCAGAAATTGGGGTCAGAACTGGCAAAGCCATACCTATTTAGATGCCCAGCCCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACTCTTGTTTCCAAGAATGTGGTTCCTGCTGGTTGGTCCTTTGGCCAGACCTTCATCGGTTCCCAATTTCGGTGA 735 50.48 MKLHFLFLVPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGSNTAAISTALFNNGLSCGSCYEIKCVDDPKWCLPGSVLVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVLYRRAPCKRKGGVRFTINGHSYFNLVLITNVGGVGDVHAVSVRGSSSGWQPMSRNWGQNWQSHTYLDAQPLSFKLTTSDGRTLVSKNVVPAGWSFGQTFIGSQFR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12976236 12978285 + MELO3C008552.2.1 Cme05g00939 328002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00939 244 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
Cme05g00939 244 PANTHER EXPANSIN 5 243 - -
Cme05g00939 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Cme05g00939 244 PANTHER EXPANSIN-A15 5 243 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 51 65 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Cme05g00939 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Cme05g00939 244 Gene3D - 151 243 IPR036749 -
Cme05g00939 244 SMART dpbb_1 56 141 IPR007112 -
Cme05g00939 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 151 IPR007112 -
Cme05g00939 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Cme05g00939 244 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576
Cme05g00939 244 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cme05g00939 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cme05g00939 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Cme05g00939 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Cme05g00939 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cme05g00939 244 SUPERFAMILY Barwin-like endoglucanases 12 169 IPR036908 -
Cme05g00939 244 Gene3D - 13 147 IPR036908 -
Cme05g00939 244 Pfam Lytic transglycolase 56 141 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01876 Cme-Chr2:25344916 Cme05g00939 Cme-Chr5:12976236 2.39E-134 dispersed
Cme05g00939 Cme-Chr5:12976236 Cme10g01247 Cme-Chr10:13121106 1.51E-128 dispersed
Cme12g01981 Cme-Chr12:25595789 Cme05g00939 Cme-Chr5:12976236 2.79E-101 dispersed
Cme05g00939 Cme-Chr5:12976236 Cme10g00403 Cme-Chr10:2578552 2.13E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00939 - K20628 csv:101202833 465.307