Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00950 ATGGGGTCCTGCTTGTCTGCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGTAAGAACAGTTCCAAGAGGCGAAATTGTTCGAGAAATTCCTCATTTGGGGATCTCTCACTTCATCGGATCCCTGGTAGGCTCTTCACTAATGGCTTCACTGATATGGCGTCTCTGTTCACGCAGCAGGGCAAGAAAGGAACCAATCAGGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGGACCGACACAATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCCAAGAAAGTGAGGGATTCTCTTCCTCTGAGATTGAGTGCACATTGGGAGGTTAACTTGACCACTGATGATGTTCATAGAGAGATCAGTCTTAATAATACAGGAAGTATGAACTCGGATGAAGCTACCTCGTTTGTATCTGCTGATGAAGAGTTTAGGGCCTCCATTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCTTTTCTTAAGGCTTTTAGAGTTATGGATTGGGAACTCAGGATGCACCAAACTATAGATAGCTTCTGTAGTGGTACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTGATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGGTGACTCTCTTGTTCCCATTCAATTGACTGTGGATCTGAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATTCGCAAGTGTAGAGGTCGTGTCTTTGCTCTCCAAGACGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTAAAAGACTTTGGTCTTATCTCTGTACCTGAAATATCATATAGACGGCTCACTGAAAAAGATGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTACAGCAGCTCGCACTCTGGTAGAAACTGCAGTTAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCTGTTGTTTGCCTCTTCCTTGACTCAAACTCTGGCAATCTTTCTTCGTCTGCTTCCAATACCAAACCAGAAGAGCAACAAAGTTCAGCAGATCATTTCAGCACTCCAGTCGAGAACGAAGATTTGTCTGGCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGAACCAGCAAGGAAATTTTGCAGGATGGAAGCGAAGAAGATGAAACGAAGGAGGAAGAACATTCAGAAACGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAACACTTTGGTAACCCTGCCAAGATTCAATCCTGGAAAAGAAGATAGGAAAGGCCGGAAGTAA 1458 45.06 MGSCLSAESRSPIPGSPTSPAKHHRSKNSSKRRNCSRNSSFGDLSLHRIPGRLFTNGFTDMASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREISLNNTGSMNSDEATSFVSADEEFRASIDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKGDSLVPIQLTVDLKPNLPAEAERIRKCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAVKAWKHKYPTSKIDDCAVVCLFLDSNSGNLSSSASNTKPEEQQSSADHFSTPVENEDLSGPNGLNRSGTVRTSKEILQDGSEEDETKEEEHSETGIEWSALEGVSRVNTLVTLPRFNPGKEDRKGRK 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13176826 13180666 - MELO3C008560.2.1 Cme05g00950 328013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00950 485 Gene3D - 59 383 IPR036457 -
Cme05g00950 485 PANTHER ALPHABET, ISOFORM E-RELATED 1 469 - -
Cme05g00950 485 CDD PP2Cc 61 381 IPR001932 -
Cme05g00950 485 ProSiteProfiles PPM-type phosphatase domain profile. 61 381 IPR001932 -
Cme05g00950 485 MobiDBLite consensus disorder prediction 1 41 - -
Cme05g00950 485 SMART PP2C_4 52 379 IPR001932 -
Cme05g00950 485 Pfam Protein phosphatase 2C 172 360 IPR001932 -
Cme05g00950 485 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 469 - -
Cme05g00950 485 MobiDBLite consensus disorder prediction 1 16 - -
Cme05g00950 485 SUPERFAMILY PP2C-like 61 382 IPR036457 -
Cme05g00950 485 MobiDBLite consensus disorder prediction 389 458 - -
Cme05g00950 485 MobiDBLite consensus disorder prediction 389 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00348 Cme-Chr1:2586841 Cme05g00950 Cme-Chr5:13176826 5.63E-148 dispersed
Cme03g00675 Cme-Chr3:11671461 Cme05g00950 Cme-Chr5:13176826 6.51E-171 dispersed
Cme05g00950 Cme-Chr5:13176826 Cme06g02677 Cme-Chr6:33897738 2.42E-126 dispersed
Cme06g00664 Cme-Chr6:4280650 Cme05g00950 Cme-Chr5:13176826 2.53E-29 dispersed
Cme11g01952 Cme-Chr11:27581502 Cme05g00950 Cme-Chr5:13176826 5.32E-28 dispersed
Cme05g00950 Cme-Chr5:13176826 Cme05g01581 Cme-Chr5:25027632 7.04E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00950 - - csv:101222150 897.501