Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01005 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTTTCCCCTCAACACCAACCCTCCAACCACGCTCACGCTCACGCTGCCGCCGCAACCGCCCCCTTCACCTCCGACCAAATCTCTCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCCTATGCTGTTTATGAACACTCACAAGATTGGAATAATATGAAGGGTTTAGGGTCGACTCAAAGTTCAGATTTTTCTGCTTTAATCGAAAGCCAACACCAACCAAAGCTTGAAAATTTCCTTGGCCACCACTCTTTCACCGACCACGACCACGACCACGCCACCGCCGCAGTCTACTCCAATGCCTCCGCCAACTACATCTTCCAAAATTCTTCTTTGGACCTTCCATCGGAGGCTGCCGGCTGTGGCGGTGGAAGACCCAGCGCCGGTAACGGGAACGCCAACAATACTACCTCTATTGGTTTGTCGATGATCAAGACGTGGTTGAGAAATCAACCAGCGCCGCCTCAAGCGGTTGCCAAAGGCGGCGGAGATCACGACGGTAGTGCAGTTGGAATAAGTAATCATCTCACAACCTCACATACTTTATCACTGTCGATGAACACCGGCCCCCCACCGCCGTCCCATTCTTCGTCCGGCTCGACGGCTCTACCACTTCTGACGGCCAGCGGCGGTGAAAGCTCCTCCTCCGATAACAAACAAGGGAAATCATCGGGTGTCGAGATCGACGCTGAAAATGGCGCCGTTGAAGCTGTCCCGAGAAAATCTGTCGATACATTTGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGACAATAGTTGTAGACGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAGGAAAAGGCTGCAAGAGCTTACGATTTAGCAGCACTTAAATACTGGGGTACCACAACCACAACAAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCCGGCAAGAGTTTGTTGCGTCTTTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCCATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGATCTCTACTTGGGAACTTTCGGTACGCAAGAGGAAGCAGCGGAAGCATATGACATAGCAGCTATAAAGTTCAGAGGACTAAATGCGGTGACCAACTTTGATATGAGCCGTTACGATGTGAAAGCCATTCTTGAAAGTAACACATTACCCATCGGCGGTGCTGCCAAGCGCCTAAAAGACATTCACCACTCTGACGTCCCTCTCGACCCCCAAACAGCAGGAGACATCATAACGTCTCACCTCTCTGATGGAATAATAAATATTTCATCCACCACGACTCCTTACAGTGGCGGTGGATGGCCCACTATCGCCTTCCACCATCACCACCCTTACGCCTTCCACTACCCCTATGCTACTCCGCAACAACGATTGTGGTGCAAACAAGAACAGGACGCTACTGCCATCGCCGCCGACAACTTTTTCCCACACGGTGGGGCTATGGACTCAATGGAACATAGCTCGGGGTCTTACAGCAGTGCCAATGGAGATGGGTACAACGGAAATTTCTTGATTCCGACGGGGGCGGAAGGAAGCAGCAGCAACAATGGGGGATTAGGAGACATTGGAGAAGTGAATTTATTTGGTGGTTGTTCTAATGTGGATGATCCGTTCCATGCAACAAGAACGTCTAATTTGTATAATTACCACAACTCCTCTCTTCAGCTGCAACCGCCACCTCCGGCATCCGGGATGCAAAGCTCTAACTGCAACAACTGGCTTCCTCCGGCGAGATCGGTTTGTCACGGGGGAGCTCCGCCACCTTTCACCATTTGGAATGACACTTAG 1959 50.13 MGSINWLGFSLSPQHQPSNHAHAHAAAATAPFTSDQISPSDVSAVCFDNLPSSYAVYEHSQDWNNMKGLGSTQSSDFSALIESQHQPKLENFLGHHSFTDHDHDHATAAVYSNASANYIFQNSSLDLPSEAAGCGGGRPSAGNGNANNTTSIGLSMIKTWLRNQPAPPQAVAKGGGDHDGSAVGISNHLTTSHTLSLSMNTGPPPPSHSSSGSTALPLLTASGGESSSSDNKQGKSSGVEIDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIHHSDVPLDPQTAGDIITSHLSDGIINISSTTTPYSGGGWPTIAFHHHHPYAFHYPYATPQQRLWCKQEQDATAIAADNFFPHGGAMDSMEHSSGSYSSANGDGYNGNFLIPTGAEGSSSNNGGLGDIGEVNLFGGCSNVDDPFHATRTSNLYNYHNSSLQLQPPPPASGMQSSNCNNWLPPARSVCHGGAPPPFTIWNDT 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14308733 14313275 - MELO3C008602.2.1 Cme05g01005 328068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01005 652 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 PRINTS Ethylene responsive element binding protein signature 407 427 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 SUPERFAMILY DNA-binding domain 366 427 IPR016177 GO:0003677
Cme05g01005 652 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 547 - -
Cme05g01005 652 SUPERFAMILY DNA-binding domain 264 333 IPR016177 GO:0003677
Cme05g01005 652 ProSiteProfiles AP2/ERF domain profile. 367 425 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 MobiDBLite consensus disorder prediction 184 238 - -
Cme05g01005 652 Gene3D AP2/ERF domain 265 333 IPR036955 GO:0003700|GO:0006355
Cme05g01005 652 Gene3D AP2/ERF domain 367 427 IPR036955 GO:0003700|GO:0006355
Cme05g01005 652 CDD AP2 366 427 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 MobiDBLite consensus disorder prediction 166 246 - -
Cme05g01005 652 Pfam AP2 domain 367 417 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 Pfam AP2 domain 265 323 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 SMART rav1_2 265 337 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 SMART rav1_2 367 431 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 547 - -
Cme05g01005 652 ProSiteProfiles AP2/ERF domain profile. 265 331 IPR001471 GO:0003700|GO:0006355
Cme05g01005 652 CDD AP2 264 333 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01029 Cme-Chr2:15244527 Cme05g01005 Cme-Chr5:14308733 2.60E-85 dispersed
Cme02g01576 Cme-Chr2:22818754 Cme05g01005 Cme-Chr5:14308733 4.14E-13 dispersed
Cme03g01289 Cme-Chr3:22464069 Cme05g01005 Cme-Chr5:14308733 2.15E-11 dispersed
Cme04g01962 Cme-Chr4:27233307 Cme05g01005 Cme-Chr5:14308733 2.80E-07 dispersed
Cme05g00142 Cme-Chr5:970867 Cme05g01005 Cme-Chr5:14308733 3.36E-24 dispersed
Cme05g00143 Cme-Chr5:972392 Cme05g01005 Cme-Chr5:14308733 3.41E-10 dispersed
Cme05g01005 Cme-Chr5:14308733 Cme07g00259 Cme-Chr7:1695945 3.60E-112 dispersed
Cme06g02230 Cme-Chr6:28999704 Cme05g01005 Cme-Chr5:14308733 1.96E-26 dispersed
Cme10g00187 Cme-Chr10:1264092 Cme05g01005 Cme-Chr5:14308733 2.66E-12 dispersed
Cme05g01005 Cme-Chr5:14308733 Cme08g00672 Cme-Chr8:4410391 9.79E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41352 PF00847 AP2 1.50E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01005 K09285 - csv:101219473 1260.74