Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme05g01015 | CAGCAAAACTATATAATCTTGGCCGAGGCAGATATTCAACAATGTCAGGAGGAAGACATCACGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCTAGCATCCTGCTTCGATATTATAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGATCTGTTGGCTTACTACAAAAACCAGTGTTGCGACATTCAAATGAATTAGAACTACCTTGTGGTATATGTTTTGAAATCTATCCACTTGATAAGATCCAGTCAGCTGCCTGTGGCCATCCATTTTGCAATGCTTGTTGGACAGGTTACATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTACGATGTCCAGATCCATCCTGTGGTGCTGCTATCGATCAAGATATGATAAATCTATTAGTTTCTGAAGACGACAAAAAAAAGTACTTTCGTTATTTTGTTCGATCCTACGTCGAAGACAATCGGAAGACCAAATGGTGCCCTGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCGGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAGTGTAAACGACCAATTGAGAAAAATCAAGGATGCATGCATCTTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGTGGATTCTATGCATGTAATCGCTATGAAACTGCCAAGCAAGAGGGAGTGTATGATGATGCAGAAAAGCGAAGAGAGATGGCAAAGAATTCTCTGGAGAGGTATACACATTATTATGAAAGATGGGCTACCAACCAATCGTCCAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAGACCGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCTCAATCACAGCTAAAATTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACATATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAAGAGTTGCATGCTTACTTAAATGCTGCTGATGGCCCATCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTCGAGAATTTAGTTCGTGCACTTGAGAACGGTTTGTCGGATGTTGATTCACACGGTACCTGCAGCAAAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGAAAAGGCAAGATGAGTGCATTCAGAGGTAGCGGTTCGAGTCGAAACATCGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATCTTAAGTCAGCTACATTCTGCCAGATGTGCCAACAACGGCGATAA | 1599 | 42.15 | QQNYIILAEADIQQCQEEDITRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPCGICFEIYPLDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAIDQDMINLLVSEDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHLTCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPQSQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTASSKSTGGCRSKGGKGKMSAFRGSGSSRNIDDTDHWSCEHCTFANLKSATFCQMCQQRR | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 14651663 | 14684845 | + | MELO3C008609.2.1 | Cme05g01015 | 328078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme05g01015 | 532 | CDD | RING-HC_RBR_TRIAD1_like | 81 | 131 | - | - | |
| Cme05g01015 | 532 | MobiDBLite | consensus disorder prediction | 467 | 501 | - | - | |
| Cme05g01015 | 532 | Pfam | Ariadne domain | 299 | 463 | IPR045840 | - | |
| Cme05g01015 | 532 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 1 | 480 | IPR031127 | GO:0004842|GO:0016567 | |
| Cme05g01015 | 532 | SUPERFAMILY | RING/U-box | 78 | 159 | - | - | |
| Cme05g01015 | 532 | SMART | ibrneu5 | 150 | 212 | IPR002867 | - | |
| Cme05g01015 | 532 | SMART | ibrneu5 | 216 | 286 | IPR002867 | - | |
| Cme05g01015 | 532 | SUPERFAMILY | RING/U-box | 231 | 279 | - | - | |
| Cme05g01015 | 532 | Gene3D | - | 504 | 532 | - | - | |
| Cme05g01015 | 532 | SUPERFAMILY | Ran binding protein zinc finger-like | 505 | 532 | IPR036443 | - | |
| Cme05g01015 | 532 | MobiDBLite | consensus disorder prediction | 467 | 482 | - | - | |
| Cme05g01015 | 532 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 505 | 532 | IPR001876 | - | |
| Cme05g01015 | 532 | Pfam | IBR domain, a half RING-finger domain | 150 | 212 | IPR002867 | - | |
| Cme05g01015 | 532 | Pfam | IBR domain, a half RING-finger domain | 229 | 277 | IPR002867 | - | |
| Cme05g01015 | 532 | ProSiteProfiles | Zinc finger RING-type profile. | 81 | 125 | IPR001841 | - | |
| Cme05g01015 | 532 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 1 | 480 | - | - | |
| Cme05g01015 | 532 | ProSitePatterns | Zinc finger RanBP2-type signature. | 509 | 528 | IPR001876 | - | |
| Cme05g01015 | 532 | ProSiteProfiles | TRIAD supradomain profile. | 77 | 290 | IPR044066 | - | |
| Cme05g01015 | 532 | Gene3D | - | 208 | 464 | - | - | |
| Cme05g01015 | 532 | SUPERFAMILY | RING/U-box | 151 | 219 | - | - | |
| Cme05g01015 | 532 | SMART | zf_4 | 507 | 531 | IPR001876 | - | |
| Cme05g01015 | 532 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 160 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g00666 | Cme-Chr3:11422011 | Cme05g01015 | Cme-Chr5:14651663 | 0 | dispersed | |
| Cme04g00137 | Cme-Chr4:1029807 | Cme05g01015 | Cme-Chr5:14651663 | 1.02E-11 | dispersed | |
| Cme05g01015 | Cme-Chr5:14651663 | Cme11g00468 | Cme-Chr11:4581977 | 1.62E-59 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme05g01015 | K11968 | - | csv:101218052 | 1123.23 |