Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01015 CAGCAAAACTATATAATCTTGGCCGAGGCAGATATTCAACAATGTCAGGAGGAAGACATCACGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCTAGCATCCTGCTTCGATATTATAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGATCTGTTGGCTTACTACAAAAACCAGTGTTGCGACATTCAAATGAATTAGAACTACCTTGTGGTATATGTTTTGAAATCTATCCACTTGATAAGATCCAGTCAGCTGCCTGTGGCCATCCATTTTGCAATGCTTGTTGGACAGGTTACATTAGCACATCTATCAATGATGGTCCAGGATGTCTAATGTTACGATGTCCAGATCCATCCTGTGGTGCTGCTATCGATCAAGATATGATAAATCTATTAGTTTCTGAAGACGACAAAAAAAAGTACTTTCGTTATTTTGTTCGATCCTACGTCGAAGACAATCGGAAGACCAAATGGTGCCCTGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCGGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAGTGTAAACGACCAATTGAGAAAAATCAAGGATGCATGCATCTTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGTGGATTCTATGCATGTAATCGCTATGAAACTGCCAAGCAAGAGGGAGTGTATGATGATGCAGAAAAGCGAAGAGAGATGGCAAAGAATTCTCTGGAGAGGTATACACATTATTATGAAAGATGGGCTACCAACCAATCGTCCAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAGACCGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCTCAATCACAGCTAAAATTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACATATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAAGAGTTGCATGCTTACTTAAATGCTGCTGATGGCCCATCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTCGAGAATTTAGTTCGTGCACTTGAGAACGGTTTGTCGGATGTTGATTCACACGGTACCTGCAGCAAAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGAAAAGGCAAGATGAGTGCATTCAGAGGTAGCGGTTCGAGTCGAAACATCGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCAAATCTTAAGTCAGCTACATTCTGCCAGATGTGCCAACAACGGCGATAA 1599 42.15 QQNYIILAEADIQQCQEEDITRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPCGICFEIYPLDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAIDQDMINLLVSEDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHLTCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPQSQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTASSKSTGGCRSKGGKGKMSAFRGSGSSRNIDDTDHWSCEHCTFANLKSATFCQMCQQRR 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14651663 14684845 + MELO3C008609.2.1 Cme05g01015 328078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01015 532 CDD RING-HC_RBR_TRIAD1_like 81 131 - -
Cme05g01015 532 MobiDBLite consensus disorder prediction 467 501 - -
Cme05g01015 532 Pfam Ariadne domain 299 463 IPR045840 -
Cme05g01015 532 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 480 IPR031127 GO:0004842|GO:0016567
Cme05g01015 532 SUPERFAMILY RING/U-box 78 159 - -
Cme05g01015 532 SMART ibrneu5 150 212 IPR002867 -
Cme05g01015 532 SMART ibrneu5 216 286 IPR002867 -
Cme05g01015 532 SUPERFAMILY RING/U-box 231 279 - -
Cme05g01015 532 Gene3D - 504 532 - -
Cme05g01015 532 SUPERFAMILY Ran binding protein zinc finger-like 505 532 IPR036443 -
Cme05g01015 532 MobiDBLite consensus disorder prediction 467 482 - -
Cme05g01015 532 ProSiteProfiles Zinc finger RanBP2 type profile. 505 532 IPR001876 -
Cme05g01015 532 Pfam IBR domain, a half RING-finger domain 150 212 IPR002867 -
Cme05g01015 532 Pfam IBR domain, a half RING-finger domain 229 277 IPR002867 -
Cme05g01015 532 ProSiteProfiles Zinc finger RING-type profile. 81 125 IPR001841 -
Cme05g01015 532 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 480 - -
Cme05g01015 532 ProSitePatterns Zinc finger RanBP2-type signature. 509 528 IPR001876 -
Cme05g01015 532 ProSiteProfiles TRIAD supradomain profile. 77 290 IPR044066 -
Cme05g01015 532 Gene3D - 208 464 - -
Cme05g01015 532 SUPERFAMILY RING/U-box 151 219 - -
Cme05g01015 532 SMART zf_4 507 531 IPR001876 -
Cme05g01015 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 160 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01015 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101218052 1123.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00666 Cme-Chr3:11422011 Cme05g01015 Cme-Chr5:14651663 0 dispersed
Cme04g00137 Cme-Chr4:1029807 Cme05g01015 Cme-Chr5:14651663 1.02E-11 dispersed
Cme05g01015 Cme-Chr5:14651663 Cme11g00468 Cme-Chr11:4581977 1.62E-59 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00468 . 164 543 ARIADNE family AT4G34370 77.1 2.8e-178 621.7
Cme11g00468 . 58 544 ARIADNE family AT2G16090 77.3 3.2e-226 781.2
Cme11g00468 . 28 543 ARIADNE family AT3G27710 61.7 3.0e-185 645.2
Cme11g00468 . 44 522 ARIADNE family AT3G27720 54.5 5.2e-144 508.1
Cme05g01015 . 2 477 ARIADNE family AT1G05890 72.5 6.6e-218 753.8
Cme03g00666 . 116 584 ARIADNE family AT1G05890 73.1 4.0e-215 744.6
Cme05g01015 . 1 532 ARIADNE family AT1G65430 75.0 1.4e-249 859.0
Cme03g00666 . 71 643 ARIADNE family AT1G65430 67.7 5.8e-240 827.0
Cme05g01015 . 1 395 ARIADNE family AT2G31780 56.7 9.5e-145 510.4
Cme03g00666 . 112 509 ARIADNE family AT2G31780 57.5 4.4e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g01015 Cme_Chr05 FPKM 20.846046 22.768736 23.34248 22.176838 13.542983 15.306528 15.872582 35.405643 36.523849 34.287003