Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01064 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGATTCCCCTTCTCGGCTCTTCAGCCACCACCAACTCTACTGCGGTAGCCGAGTTTCTATGCTCCAGATTCACCACAATAGCCACCACTTTCAGCTCCACCACCTATGCCATCGATAACACCTACCTTCTCTTCTCCGCCTACCTCGTCTTTGCCATGCAGCTTGGTTTTGCCATGCTTTGTGCTGGCTCCGTCCGTGCCAAAAACACTATGAACATCATGCTCACCAATGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTCGGTTTCGCCTTTGCCTTCGGTGCTCCCTCCAACTCCTTCATCGGCCGCCATTTTTTTGACCTCTCCAGTGTCCCTAATCCCTCTACTGACTATAGCTTTTTTCTCTATCAATGGGCCTTTGCTATTGCTGCTGCAGGAATCACCAGTGGCTCCATAGCTGAACGAACCCGATTTGTGGCCTATCTCATCTACTCCACTATTCTAACTGGCTTCATCTACCCTATAGTCTCCCATTGGTTTTGGTCTGCTGATGGGTGGGCCAGCCCAACACGATCCAACAACCTTCTATTCAACTCAGGTGCAATCGACTTTGCCGGGTCCGGTGTGGTCCACATGGTTGGTGGTGTAGCCGGTCTTTGGGGAGCTTTAATCGAAGGCCCAAGAATCGGTCGATTTGATCGATCCGGTCGATCTGTCGCCCTTCGCGGCCACAGTGCATCACTCGTAGTCCTCGGCTCCTTCCTCCTTTGGTTCGGCTGGTATGGATTCAACCCCGGTTCATTCCTAACAATTTCCAAATCCTACAACGATGGTCGTCCTTACTATGGCCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACTACCCTTTTTGCAAAGCGTCTCTTAGTCGGCCATTGGAACGTAATCGACGTGTGCAACGGCCTATTAGGGGGGTTTGCCGCCATCACATCTGGTTGCGCTGTGGTGGAGCCATGGGCGGCAGTGATATGTGGTTTCGTAGCATCTTGGGTGTTAATTGGGTTCAACAAGCTAGCGGAGAGGCTGAGCTTCGATGACCCATTAGAAGCGGCACAATTGCATGGCGGGTGCGGGGCATGGGGTTTGATATTCACAGGACTATTTGCGACAAAGAAATACGTCGGGGAGGTATATCAAGTCGGGCGGCCTTACGGATTGCTGATGGGCGGGGGATGGAGGCTATTGGCTGCACAAGTGGTGGAAATTGTAGCGATATTTGGGTGGGTGTCTTTGACAATGGGAGGGTTGTTTTATGGGTTGATGAAAGGGAAACTATTGAGAATATCAAGGGAGGATGAAATGGCAGGGATGGATTTAACGAGACATGGAGGATTTGCTTATGTATATAATGATGAAGAAGATATATCAGAGAAGTCGTCTGGTTTTATGATGAGGACAATTGAGCCTGCTGATGCTAGTTCTCCCAAGGACCATACTTCTTCTGGGATAGGGGCTGTTTGA 1536 50.72 MATLSCQPSDLIPLLGSSATTNSTAVAEFLCSRFTTIATTFSSTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFDLSSVPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTRFVAYLIYSTILTGFIYPIVSHWFWSADGWASPTRSNNLLFNSGAIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLIGFNKLAERLSFDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYQVGRPYGLLMGGGWRLLAAQVVEIVAIFGWVSLTMGGLFYGLMKGKLLRISREDEMAGMDLTRHGGFAYVYNDEEDISEKSSGFMMRTIEPADASSPKDHTSSGIGAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16264206 16266912 - MELO3C008657.2.1 Cme05g01064 328127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01064 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme05g01064 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cme05g01064 511 PANTHER AMMONIUM TRANSPORTER 5 501 - -
Cme05g01064 511 PANTHER AMMONIUM TRANSPORTER 5 501 - -
Cme05g01064 511 SUPERFAMILY Ammonium transporter 46 451 - -
Cme05g01064 511 TIGRFAM amt: ammonium transporter 49 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme05g01064 511 Gene3D Ammonium transporter AmtB like domains 30 490 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01064 Cme-Chr5:16264206 Cme06g00438 Cme-Chr6:2781414 0 dispersed
Cme05g01064 Cme-Chr5:16264206 Cme05g01065 Cme-Chr5:16335202 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01064 K03320 K07573 csv:101217871 967.992