Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01065 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGGTACCCCTTCTCGGGTCTTCCGCCACCGCGAACTCCACCGCCATAGCCGAGTTTCTATGCTCCAGATTCACCACCATAGCTACCACTTTCAGCTCCACCACCTACGCGGTCGACAACACCTACCTCCTCTTCTCCGCCTACCTTGTCTTCGCCATGCAGCTTGGCTTCGCCATGCTTTGTGCTGGCTCCGTCCGTGCCAAAAACACTATGAACATCATGCTCACTAATGTCCTCGACGCAGCTGCCGGTGGTCTCTCCTACTACCTCTTCGGGTTCGCCTTTGCCTTCGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGGGCTCTCCAATTTTCCCAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCCTTCGCTATTGCTGCTGCAGGCATCACTAGTGGCTCCATTGCTGAGCGAACTCAATTCGTGGCTTATCTCATCTACTCCAGCATTCTTACTGGTTTCGTCTATCCCATTGTGTCTCATTGGTTTTGGTCTTCCGACGGGTGGGCCAGCCCAACCCGCCCTAGTAATCTTCTATTCAATTCAGGAGCAATCGACTTTGCCGGATCAGGTGTTGTCCACATGGTTGGTGGTATAGCAGGCCTCTGGGGAGCTCTAATTGAAGGCCCTCGAATTGGCCGGTTCGATCGTTCTGGCCGATCTGTAGCCCTTCGTGGCCATAGCGCCTCTTTAGTAGTTCTTGGCTCATTCCTCCTTTGGTTCGGCTGGTACGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAAATCATACAACGACGGTCGCCCTTACTACGGTCAATGGAGTGCTATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACGACCCTCTTTACAAAACGCTTATTAGTTGGCCATTGGAATGTAATTGATGTATGTAATGGTTTGTTAGGAGGATTCGCGGCCATCACGTCTGGTTGTGCCGTTGTCGAGCCATGGGCTGCGGTGATATGTGGATTCGTAGCATCCTGGGTTTTAATTAGCTTCAACAAGTTAGCTGAAAAGGTCAACTACGATGATCCATTAGAGGCAGCGCAACTGCACGGTGGGTGTGGCGCGTGGGGTCTTATATTTACTGGATTATTTGCTAGAAAGGAGTATGTTGCAGAGGTTTACCAGGCTGGGCGTCCATATGGATTGTTCATGGGCGGTGGAGGGAGACTTCTAGCGGCGCAGTTGATCGAGATATTGGCCATAATTGGGTGGGTTTCTGTAACGATGGGGGGATTGTTTTATGCATTGAAGAAGGTGAAATTGTTAAGGATATCAAGGGAAGATGAGATGGCTGGGATGGATTTGACAAGACATGGAGGATTCGCTTATGTATATAACGATGAGGACGATCCCTCTGGAAAGCCATCTGGATTTATGATGAGGAGAATTGAGCCTGCTAATGAGACTCCTCCTCAAGAACATTCTCCTTCAGGGATGGCAGCTGTTTGA 1536 50.2 MATLSCQPSDLVPLLGSSATANSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSSDGWASPTRPSNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLISFNKLAEKVNYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLFMGGGGRLLAAQLIEILAIIGWVSVTMGGLFYALKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEDDPSGKPSGFMMRRIEPANETPPQEHSPSGMAAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16335202 16337759 - MELO3C008659.2.1 Cme05g01065 328128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01065 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cme05g01065 511 MobiDBLite consensus disorder prediction 484 511 - -
Cme05g01065 511 SUPERFAMILY Ammonium transporter 46 453 - -
Cme05g01065 511 PANTHER AMMONIUM TRANSPORTER 5 502 - -
Cme05g01065 511 TIGRFAM amt: ammonium transporter 49 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme05g01065 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme05g01065 511 PANTHER AMMONIUM TRANSPORTER 5 502 - -
Cme05g01065 511 Gene3D Ammonium transporter AmtB like domains 30 484 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00939 Cme-Chr4:12629376 Cme05g01065 Cme-Chr5:16335202 0 dispersed
Cme05g01065 Cme-Chr5:16335202 Cme06g00438 Cme-Chr6:2781414 0 dispersed
Cme05g01064 Cme-Chr5:16264206 Cme05g01065 Cme-Chr5:16335202 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01065 K03320 K07573 csv:101222356 960.674