Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01074 ATGGCCATGGACCTCCTCAAGAAAGATCTCAAACAAGTTCTTTATAGAATCATCCAGGAAGAAGATTTCGATTCCTCCGCCGCCGACGATGCTATTCAGATTTTGACTTCTTTGAAATTCTCTTTAATGCCCGCCCCTTCCTCCCAAGAATCCCCCGGCTGTTCTGGCAGTAAAACTCTCATTATCCCCGACAAGTTCCGGTGTCCAATTTCCGGCGACCTCATGAAAGATCCTGTTCTCTTGATTACCGGTCAGACATATGATCGGTTCTTCATCGAAAAGTGGTTCCATGAAGGCCACAATACATGTCCTCAAACCAAGGAAGTCCTTACCGACATGACTCTTACCCCAAATCGTCTGCTTCGGTCAATGATCTCGCAATGGTGCTTGGATAACAGATTTGAACTTCCAAGGCTTAGTTATGAGGAAGAAGTCGACAATGTAACTGAGTCCCATTTAGATGCATTGCTTAACAGGTTGATGTCTTCATCACTAATAGTTAAAAAAGAAGCTGCAAAGGAGTTGAGAGAGACAACAAGATGCAGCCATGAATTTCGAGCCCTTTTTGCAAAGCTCCCGGGGTCCGTCGAGAGATTATTACATCCTCTGATCTCAATTGGCAAAGTTGATCTCCATCCTGATCTTCAAGAGGATTTGATTACCACTATTCTCAATATCTCAGTTTTTGATGATAACAAGGAACATGTAGTGGAGAACCCGTTGGTCCTCCCTTTGCTGATTGAATCTTTACAGCATGGAAGTATTGAGTTGACAGCAAATGCAGTTGCAGCTATTTACTCATTATCTTTCAGTGAGGCAAATAAGATAACAATGGGAAAAGTAGGAATTTTCAAGCATCTGATTTCACTTTTAGACTATGCCCATCCTGGAGTGACAAGAGATGCCGGTTCAGCAATCTACAACCTCTGTACCACTGTCGAAAACAGAGAGAAGGCAGTCGGTAGTGGAGTAGTTGCCGCCATTTTCCGAAACATCGCCCGAAGCTTATTATTGGTCGATAAGTTGATTTCTATACTTGCACTTCTTTGCACCGATGTGAAGGCTATTGATGAGATGTGCAAGTTTGATGTAGTGCCTTGTATGCTGAGGTTCATAAGAGAAACTGAGTCCCAACGCATCAAAGAAAATTGTGCATCGATACTCTTTGCAATTTGCACAACTGATCAAAGCCAATTGAGGAAGATCCAAGAGGATGAAAATAAAAATGAGACGATCTTGGAACTTTCAAAGAATGGTAATTCAAGGGCAAGTAGAAAGGCTACCGGCATACTCGAGAGGATGCAGAGAGCTGCTTCAAGAACTCACACTTCCTAA 1335 42.77 MAMDLLKKDLKQVLYRIIQEEDFDSSAADDAIQILTSLKFSLMPAPSSQESPGCSGSKTLIIPDKFRCPISGDLMKDPVLLITGQTYDRFFIEKWFHEGHNTCPQTKEVLTDMTLTPNRLLRSMISQWCLDNRFELPRLSYEEEVDNVTESHLDALLNRLMSSSLIVKKEAAKELRETTRCSHEFRALFAKLPGSVERLLHPLISIGKVDLHPDLQEDLITTILNISVFDDNKEHVVENPLVLPLLIESLQHGSIELTANAVAAIYSLSFSEANKITMGKVGIFKHLISLLDYAHPGVTRDAGSAIYNLCTTVENREKAVGSGVVAAIFRNIARSLLLVDKLISILALLCTDVKAIDEMCKFDVVPCMLRFIRETESQRIKENCASILFAICTTDQSQLRKIQEDENKNETILELSKNGNSRASRKATGILERMQRAASRTHTS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16603013 16605456 + MELO3C008669.2.1 Cme05g01074 328137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01074 444 SUPERFAMILY RING/U-box 62 137 - -
Cme05g01074 444 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Cme05g01074 444 PANTHER U BOX DOMAIN-CONTAINING 3 438 - -
Cme05g01074 444 Pfam U-box domain 62 133 IPR003613 GO:0004842|GO:0016567
Cme05g01074 444 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 46-RELATED 3 438 - -
Cme05g01074 444 Gene3D - 143 442 IPR011989 -
Cme05g01074 444 SMART arm_5 229 270 IPR000225 GO:0005515
Cme05g01074 444 SMART arm_5 352 393 IPR000225 GO:0005515
Cme05g01074 444 SMART arm_5 271 311 IPR000225 GO:0005515
Cme05g01074 444 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Cme05g01074 444 SUPERFAMILY ARM repeat 151 434 IPR016024 -
Cme05g01074 444 Pfam Armadillo/beta-catenin-like repeat 272 310 IPR000225 GO:0005515
Cme05g01074 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 136 IPR013083 -
Cme05g01074 444 CDD RING-Ubox_PUB 66 108 IPR045210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01074 - - - csv:101217167 788.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01429 Cme-Chr4:20321918 Cme05g01074 Cme-Chr5:16603013 4.21E-119 dispersed
Cme05g01074 Cme-Chr5:16603013 Cme12g00199 Cme-Chr12:2053105 1.52E-70 dispersed
Cme05g01074 Cme-Chr5:16603013 Cme11g01284 Cme-Chr11:19590109 3.82E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0625 . . . . Cme05g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002180 2 2 3 3 3 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 1 2 2 2 4 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g01074 Cme_Chr05 FPKM 129.463425 136.10762 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0