Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01133 ATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGATGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTTGGGAAGGTGCACAATCTTGAAAAACAAGACAGTCATGCCCCCCCTGTTAGTTTGCCAACTGTCTCCGAATCACAACCAGTTAAAGTAGGAAGTGAGGTAGAAGTTCCCAAGGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTGAACTATAAACAATATGATTACTGCTCTGATGATGAGATTAATAGTATTAAGTGTCTAGATCAGAATTCTTCTTCAAGGCCTTCTCTATCAAAGGGAGTCATCCGTGGATGTCCGCAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCAAACCTTGCGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCCAGCATACGGGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGCCCCCTGAAGCAGAAACATATTTGGGAGGGTTCTAAATTTGTAACTCGTGTCCAAAGGATTGATAAACTCCAAAACCGAGAGTCAATAAGAAAGAACTCTAGGGTTTGCGGTCAGATGAGAAGGAAAAGGAGGAGGTGTAATCGAAAGGGGGTTGATGTTACTAACTTAAATGGAAAAAATGCAGATGCTGGCTCTGTTGAGGCCGAAAGATTTGGATTTGATCCTGGTCCTGATTTTACTTTGGCAATGTTTCAAAAATACGCAGATGACTTTAAGTCTCAATATTTTAGTAAACCACTCAGCGATACTGCGAAGGGTTGTAACCCTTCCATGCTGCAAGACAATGAAAATTGGAAACCTTCTTTGGAAGCTATTGAGGGTGAATACTGGCGGATGGTAGAGAAACCAACTGAAGAGATCGAGGTTCTCTACGGGGCTGATTTGGAAACCGGAGAGTTCGGTAGTGGTTTTCCAAAGATTAGCTGTCAAGAGGGCTCTACATTAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTACTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATCGGAATGTGCTTTTCGTCATTTTGCTGGCACGTTGAAGATCATCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCTGGAAAATTAGAGGAGGCTATGAGAAAGCATTTACCTAACCTCTTTCAAGAACAACCAGATTTACTCCATAAACTGGTTACACAACTCTCTCCATCCATATTGAAAAGTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGTGGTTTTAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACAATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAATGTTTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAACGTGCAAGGAGGAACCTTCCTTGCGGTTCTTCCCAGGCAATAAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGATTTGCATCTGTCTGCAGTTGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATAAGTGAATTAAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACAAAATCCCATGGGAATCCTCAATGGAAAGAATTATTGAGGCATTCTTCGTTATTACCAACTCTAACTGCTTTAAACAATGGTCATCATGCCAAAATGTTATCTGATACTACCTCTCTTTTAGAAGTTAAGAGGGAAATTTCCACAGTTAATGGATCTGAGAAGGAAATTGGGCCGCAAAATCATAAAATGGAGGTGAAAAAAGAAAGCCAAGACCTTGTGGCTACCAATTCAAGACATGCAGATTCACAGTCTTGTAAAGAAGATACGAATGCTCTGAATAAGATAGAAGTGAAAAGTACCACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAAAAGACAATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGATCGGTTCACTGAGATTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCCATTTTGCAGACTCCGGCAACTGATGCAACGACCATGGGAGACAAGGAGGTCAACTTGTTGTTTGAAAAAAGATTGAATAATTGTCAGTCGGGGACTGTACCTTTAAATAGTAAACAGTCTCCAAACATTAACTTCTCTGTTAGAAATGCAGCTAATGCTATTCAGAACAACACATGTTTAGATTCAGGACTAGGTCATAGTAATAAAGAATTTCTAGCGTCAACAGACACTGATTGTCAAAAACCACAGACATGTGGCTCTGGAAAACTGAATGAAGGTACCCATGGAAATGCCGGAATGAGTTCTACCTCTTGTGTGTTAGACTCTAGTAGAACTACTGCAAATTTATCTTGCAACCAAGCTAATGTGGATAGATTTGTAAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGAAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGGAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAATGTTTTAGATCCGTCAACTTTGTGCTACTATGTTTCTGAAATTCTTGATGTTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTTCTAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATCGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGATGAGTATTGGGATTCTCGGCCCTATTCTCGGCCCCAGGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACCGAAAGGAATGGGATTGATCCTAGGCCAGCTGGAGTTGATGTAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAGCTCACTCCATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAAGCGTGTTAGCTCGACTTCTTAATGAAGAGATTCAAAGTCATCGAAGATGA 3705 41.51 MGTELIRVCVEDDSDDFPSVPPGFESYISFSLGKVHNLEKQDSHAPPVSLPTVSESQPVKVGSEVEVPKVAKVTRSLRRKPCVNYKQYDYCSDDEINSIKCLDQNSSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLADAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFVTRVQRIDKLQNRESIRKNSRVCGQMRRKRRRCNRKGVDVTNLNGKNADAGSVEAERFGFDPGPDFTLAMFQKYADDFKSQYFSKPLSDTAKGCNPSMLQDNENWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKISCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGILARAFKTRVEMERARRNLPCGSSQAIKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSHGNPQWKELLRHSSLLPTLTALNNGHHAKMLSDTTSLLEVKREISTVNGSEKEIGPQNHKMEVKKESQDLVATNSRHADSQSCKEDTNALNKIEVKSTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYNENAILQTPATDATTMGDKEVNLLFEKRLNNCQSGTVPLNSKQSPNINFSVRNAANAIQNNTCLDSGLGHSNKEFLASTDTDCQKPQTCGSGKLNEGTHGNAGMSSTSCVLDSSRTTANLSCNQANVDRFVRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSRVKFINVLDPSTLCYYVSEILDVGRDGPLFMVVLEHCSSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCDEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNGIDPRPAGVDVVLRGLLKKANLEELSSLHTLLNDNRPTVDQSVLARLLNEEIQSHRR 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18102112 18111185 + MELO3C008714.2.1 Cme05g01133 328196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01133 1234 ProSiteProfiles FYR domain FYRC motif profile. 1059 1149 IPR003889 GO:0005634
Cme05g01133 1234 SMART fyrn_3 1013 1057 IPR003888 GO:0005634
Cme05g01133 1234 ProSiteProfiles JmjN domain profile. 146 187 IPR003349 -
Cme05g01133 1234 ProSiteProfiles FYR domain FYRN motif profile. 999 1057 IPR003888 GO:0005634
Cme05g01133 1234 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Cme05g01133 1234 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Cme05g01133 1234 PANTHER LYSINE-SPECIFIC DEMETHYLASE 771 1231 - -
Cme05g01133 1234 PANTHER LYSINE-SPECIFIC DEMETHYLASE 79 782 - -
Cme05g01133 1234 Pfam F/Y-rich N-terminus 1014 1054 IPR003888 GO:0005634
Cme05g01133 1234 ProSiteProfiles JmjC domain profile. 360 526 IPR003347 -
Cme05g01133 1234 SMART JmjN_1 145 186 IPR003349 -
Cme05g01133 1234 PANTHER JUMONJI 14-RELATED 771 1231 - -
Cme05g01133 1234 PANTHER JUMONJI 14-RELATED 79 782 - -
Cme05g01133 1234 SMART cupin_9 360 526 IPR003347 -
Cme05g01133 1234 Gene3D - 1007 1143 - -
Cme05g01133 1234 SUPERFAMILY Clavaminate synthase-like 361 553 - -
Cme05g01133 1234 Gene3D Cupin 131 510 - -
Cme05g01133 1234 MobiDBLite consensus disorder prediction 753 773 - -
Cme05g01133 1234 Pfam F/Y rich C-terminus 1061 1145 IPR003889 GO:0005634
Cme05g01133 1234 Pfam jmjN domain 147 180 IPR003349 -
Cme05g01133 1234 SMART fyrc_3 1063 1157 IPR003889 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01133 - - - csv:101208186 2412.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01663 Cme-Chr1:22780904 Cme05g01133 Cme-Chr5:18102112 0 dispersed
Cme05g01133 Cme-Chr5:18102112 Cme12g01007 Cme-Chr12:17605207 4.61E-42 dispersed
Cme05g01133 Cme-Chr5:18102112 Cme06g02447 Cme-Chr6:31516896 1.92E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g01133 . 1 1233 JUMONJI Transcription Factor Family AT1G08620 54.9 0.0e+00 1260.0
Cme12g01007 . 3 920 JUMONJI Transcription Factor Family AT1G30810 50.2 6.5e-240 827.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41355 PF02373 JmjC 6.70E-45 CL0029 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g01133 Cme_Chr05 FPKM 1.018008 1.237288 3.819596 4.106042 1.422458 1.394391 1.77058 0.844694 0.850777 1.107886