Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01150 ATGGTCAAGATTGGTTCTATTATTGAGTCAGGGAAGTTTGTTTTGACATCTTATGTGAAATCTAAGAAATTAAACGATGCTCAGAAACTGTTCGACGAAATGCCCAATAGAGATGTACTTACATGGACGGCCATTATATCGGGTTTTTCTAGAGTAAATTGTTCTGGAATGGCATTGCAACTGTTTAGAGAAATGCTGGTTGAAGGTGTTTGTCCAAATCACTTTACTTTGTCTACTGTTCTTAAACTTTGCTCTAAAGTAGGTGATGTGCGAATGGGTAAGGGAATTCATGGATGGATACTGAGAAACGGGGTTAAATTAGATGTTGTCTTGGAAAATTCTCTGCTTGATTTGTATGCTAAGTTTGATGAATTTGTTTATGCCAGAAAGTTGTATGATTCAATGGGAGAAAAGAGTACTGATACTGACAACATAATTCTTGGTGTATACGTCCGTAGTTGTGATGTTAACAAATCTCTTCATTTATTCAGAAACTTGCCCTGCAGAAATGCTGCGAGTTGGAATACAATTATATGTGGGCTAATGCAAGGTGGGTATCTGAATGCAGCGTTGGAGCTGCTCTATGAAATGGTGGAGAACGAATCTGAGTTTAACAATTTTACTTCTTCCATAGCTTTAAGTGTGGCTTCTTCTTTACTGATTCTTGAGCTAGGTAGACAGGTACATGGCCGGATTGTCAGGTGTGGTCTTCATAATGATGGATTTGTAAAGAGTGCACTGATAAATATGTACATTAAGTGTGGAAATTTGGAAAAAGCATCGGTGATATATAGTCAACTGCCTTCAGGTTTTGCGACGAAACAAGGTTCCAATATTGTATGCAGTGACACGATGACAGAAATTGTTTCGCGGAGCTCAATGGTGTATGGATATGTCCGAAATGGCAAATATGAAGATGCTTTCAAAACTTTTGTGTCTATGGTCCGTGAACGGGTTCTAATGGACAAATTTACCATTGCAAGCGTTGTGTCTGCTTGTGCTAATGCTGGTGTTTTGGAGCTTGGACGTCAAGTCCATGGATTCATTCAGAAATCTGTGGAACAACTTGATGCTCACTTGGCTTCCTCCTTGATTGACATGTACGCTAAAGGTGGGAGTTTGGATTGTGCCCATCGAATTTTTGACCAAATGACCTATTACTTAAATGTTGTAATATGGACTTCCATGATCGTTGGATGTTCTTTACACGGGCATGGTAAGGAAGCCATTAGATTGTTTGAACAGATGAGATATGAGGGAATTATACCAAATGAGGTCACTTTTATAGGAGTTTTAACAGCTTGCAGTCATGCGGGGCTGCTTGAAGATGGCCTTCTATATTTTAATATGATGAAAGATGTTTATGCAATCAAGCCTAAGGTTGAGCATTACACTTGTATGGTAGATCTTTACGGCCGAGCTGGACTCTTGAATGAAGTTAAAGAATTCATCTATGAGAATGATTTATCACACCTTAGTGTAGTTTGGAAGGCATTCCTATCATCCTGTCTGCTTTACAGGGACCTTGAAATGGGAAAGTGGGTTTCTGAAAAATTGTTTAGACTCGAACCACAAGATGAAGGGTCTTATGTTTTACTATCAAACATGTGCTCCGGCAGTCAAAAGTGGCAAGAAGCCTCAAGAGCAAGAAGTTCTATGCAACACAGTGGGATTAACAAAACACCTGGTCAATCTTGGATTCATTTGAAAAATCAAGTCCACTCTTTCGTTGCAGGAGACCGATCACACCCTCAACATGCTCAAATATATGAATATCTGGACAAGCTAATTGGAAGATTGAAGGAAATCGGGTACTTGCATGATGTGAAATTGGTGATGCAGGATGTAGAAGAAGAACAGGGTGAAGTGCTTCTTGGTTGGCATAGTGAAAAGCTTGCAGTTGCTTATGGCATAATCAGCTTGGGTTCTGCCATTCCAATCCGAATCATGAAGAACCTTCGGATATGTACCGATTGTCATAACTTTATGAAGTTAACATCTCAACTTTTAGGCAGAGAGATCATTGTTCGAGACATTTGTCGTTTCCATCATTTCAATTCCGGTCATTGCTCTTGTGGTGATTATTGGTGA 2091 39.45 MVKIGSIIESGKFVLTSYVKSKKLNDAQKLFDEMPNRDVLTWTAIISGFSRVNCSGMALQLFREMLVEGVCPNHFTLSTVLKLCSKVGDVRMGKGIHGWILRNGVKLDVVLENSLLDLYAKFDEFVYARKLYDSMGEKSTDTDNIILGVYVRSCDVNKSLHLFRNLPCRNAASWNTIICGLMQGGYLNAALELLYEMVENESEFNNFTSSIALSVASSLLILELGRQVHGRIVRCGLHNDGFVKSALINMYIKCGNLEKASVIYSQLPSGFATKQGSNIVCSDTMTEIVSRSSMVYGYVRNGKYEDAFKTFVSMVRERVLMDKFTIASVVSACANAGVLELGRQVHGFIQKSVEQLDAHLASSLIDMYAKGGSLDCAHRIFDQMTYYLNVVIWTSMIVGCSLHGHGKEAIRLFEQMRYEGIIPNEVTFIGVLTACSHAGLLEDGLLYFNMMKDVYAIKPKVEHYTCMVDLYGRAGLLNEVKEFIYENDLSHLSVVWKAFLSSCLLYRDLEMGKWVSEKLFRLEPQDEGSYVLLSNMCSGSQKWQEASRARSSMQHSGINKTPGQSWIHLKNQVHSFVAGDRSHPQHAQIYEYLDKLIGRLKEIGYLHDVKLVMQDVEEEQGEVLLGWHSEKLAVAYGIISLGSAIPIRIMKNLRICTDCHNFMKLTSQLLGREIIVRDICRFHHFNSGHCSCGDYW 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18430594 18444046 - MELO3C008734.2.1 Cme05g01150 328213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01150 696 PANTHER OS07G0239600 PROTEIN 12 677 - -
Cme05g01150 696 Gene3D Tetratricopeptide repeat domain 127 218 IPR011990 GO:0005515
Cme05g01150 696 Gene3D Tetratricopeptide repeat domain 8 96 IPR011990 GO:0005515
Cme05g01150 696 Pfam DYW family of nucleic acid deaminases 604 696 IPR032867 GO:0008270
Cme05g01150 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 38 72 IPR002885 -
Cme05g01150 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Cme05g01150 696 PANTHER OS07G0578800 PROTEIN-RELATED 12 677 IPR045215 GO:0003723|GO:0009451
Cme05g01150 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Cme05g01150 696 Pfam E motif 506 567 IPR046848 -
Cme05g01150 696 TIGRFAM PPR: pentatricopeptide repeat domain 292 322 IPR002885 -
Cme05g01150 696 TIGRFAM PPR: pentatricopeptide repeat domain 391 425 IPR002885 -
Cme05g01150 696 TIGRFAM PPR: pentatricopeptide repeat domain 41 73 IPR002885 -
Cme05g01150 696 TIGRFAM PPR: pentatricopeptide repeat domain 173 202 IPR002885 -
Cme05g01150 696 Gene3D Tetratricopeptide repeat domain 219 362 IPR011990 GO:0005515
Cme05g01150 696 Gene3D Tetratricopeptide repeat domain 363 586 IPR011990 GO:0005515
Cme05g01150 696 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Cme05g01150 696 Pfam E+ motif 573 600 IPR046849 -
Cme05g01150 696 Pfam PPR repeat family 38 84 IPR002885 -
Cme05g01150 696 Pfam PPR repeat family 389 436 IPR002885 -
Cme05g01150 696 Pfam PPR repeat 173 200 IPR002885 -
Cme05g01150 696 Pfam PPR repeat 245 266 IPR002885 -
Cme05g01150 696 Pfam PPR repeat 290 318 IPR002885 -
Cme05g01150 696 Pfam PPR repeat 463 485 IPR002885 -
Cme05g01150 696 Pfam PPR repeat 362 384 IPR002885 -
Cme05g01150 696 Pfam PPR repeat 113 138 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01150 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - csv:101208917 1347.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01150 Cme-Chr5:18430594 Cme10g00100 Cme-Chr10:701766 4.18E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g844 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g01150 . . . . . . . . . . . . . . Car05g00711 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009976 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g01150 Cme_Chr05 FPKM 2.588785 2.364744 1.20632 0.616238 2.176282 1.582203 2.393379 1.606335 1.266624 1.845837