Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01206 ATGGCTTCGAGTTCCTCGAATTCCCCCTGTGCAGCCTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCGTATTTTCCTCCGGATCAGCCACAGAAATTCGCAAATGTTCATAAGGTATTCGGAGCTAGTAATGTAACAAAACTTCTCAACGAATTACATCCTCACCAGAGAGAAGACGCTGTCAATTCGCTCGCTTACGAAGCCGATATGCGCCTTCGTGACCCTGTCTATGGCTGTGTAGGCGTAATTTCTCTGCTTCAACACCAACTCTGTAAACTCCAAATGGATCTCACTTGCGCAAAATCTGAACTCTCCAAATATCAAAACCTAGGGATTGAGAAACCACCAGCCAGCGTTCAATTTTGCTCGAGATCAACCGCACAGCCTTTATCACGATCAATTTTTCCCTCGAGATCAACAACAACAACAACAACAGATGATGCTCCGAAGGAACTTCGACGGCGGTAG 483 46.38 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIEKPPASVQFCSRSTAQPLSRSIFPSRSTTTTTTDDAPKELRRR 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19496762 19497424 - MELO3C008779.2.1 Cme05g01206 328269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01206 160 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Cme05g01206 160 MobiDBLite consensus disorder prediction 137 151 - -
Cme05g01206 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 117 - -
Cme05g01206 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 117 - -
Cme05g01206 160 MobiDBLite consensus disorder prediction 137 160 - -
Cme05g01206 160 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01850 Cme-Chr4:26268072 Cme05g01206 Cme-Chr5:19496762 8.87E-61 dispersed
Cme05g01206 Cme-Chr5:19496762 Cme11g00229 Cme-Chr11:2644836 8.43E-61 dispersed
Cme09g00298 Cme-Chr9:2440909 Cme05g01206 Cme-Chr5:19496762 2.63E-31 dispersed
Cme10g00257 Cme-Chr10:1686542 Cme05g01206 Cme-Chr5:19496762 4.82E-10 dispersed
Cme05g01206 Cme-Chr5:19496762 Cme02g02002 Cme-Chr2:26262460 1.22E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41356 PF03195 LOB 1.80E-43 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01206 - - mcha:111018161 241.121