Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01215 ATGTTGGAGGGTGGTCAAAAATTCCCTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAACGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCGAATGAGTCTCACACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACTCAGGGTCTTGAAAACTTTGAGAAGTGGACTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGCGCCTTTGGGAAACTCTATAGAGGTACTTATGATGGCGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAACAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCAAAGGGCGGTTCAGTTAGGCAATTCTTGATGAGGCGACAAAGTCGTTCTGTCCCACTGAAATTGGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGCTTATTCACAGGGACTTGAAATCAGACAACCTTTTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACACAAAAGGTGGACCTGTATAGCTTTGGTATCGTTCTGTGGGAGCTCATTACTGGAATGCTTCCGTTCCAGAACATGACAGCTGTTCAGGCTGCCTTTGCAGTTGTAAACAAGGGAGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTTTTGAGCGACATCATGACCCGGTGCTGGGATCCCAATCCTGATGTTAGGCCATCATTCACCGAAGTTGTCAGAATGCTTGAGAATGCGCAAACTGAGATCATGACAACAGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1242 46.14 MLEGGQKFPGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMRRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDPNPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19656771 19665416 + MELO3C003908.2.1 Cme05g01215 328278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01215 413 SMART serkin_6 132 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01215 413 SUPERFAMILY Protein kinase-like (PK-like) 117 386 IPR011009 -
Cme05g01215 413 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 2 404 - -
Cme05g01215 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672|GO:0006468
Cme05g01215 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672|GO:0006468
Cme05g01215 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672|GO:0006468
Cme05g01215 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672|GO:0006468
Cme05g01215 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672|GO:0006468
Cme05g01215 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cme05g01215 413 PANTHER SERINE-THREONINE PROTEIN KINASE 2 404 - -
Cme05g01215 413 CDD STKc_MAP3K-like 139 386 - -
Cme05g01215 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
Cme05g01215 413 ProSiteProfiles Protein kinase domain profile. 132 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01215 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672|GO:0006468
Cme05g01215 413 Gene3D Transferase(Phosphotransferase) domain 1 215 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01834 Cme-Chr4:26066055 Cme05g01215 Cme-Chr5:19656771 2.11E-68 dispersed
Cme05g01215 Cme-Chr5:19656771 Cme08g00439 Cme-Chr8:2697311 2.42E-96 dispersed
Cme06g00134 Cme-Chr6:833849 Cme05g01215 Cme-Chr5:19656771 4.01E-27 dispersed
Cme06g00588 Cme-Chr6:3781618 Cme05g01215 Cme-Chr5:19656771 3.53E-72 dispersed
Cme09g00431 Cme-Chr9:4118767 Cme05g01215 Cme-Chr5:19656771 4.45E-64 dispersed
Cme05g01215 Cme-Chr5:19656771 Cme08g00296 Cme-Chr8:1888947 8.00E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64894 PF07714 PK_Tyr_Ser-Thr 6.70E-65 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01215 - - csv:101213713 839.336