Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01222 ATGGTGATCTGTTTGTTGCCTGCAATGAACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGTGAAGCTAGAGCAAAGGACTGTGCAATGCAATGCAATAAGAATAACTAGGAGTCCAAGGGTTGAGGGAGATGACGATGAAGAAGACATTGATGACATTGAACATGAGTTCAACATTGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTCCATGGCAAGATGAGCTATGGTAGAGGCCCAGATGATGAAGAAAACGCACAGTACGGAAGATCACAGACAGCAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGGAGTACAAGATGGGACGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGGCTGTGACCCAGACATGGCTATGATTGATGCAGCCAGACAACCGCTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCATACCGAATGGTTATTGTAGCCCGGCTCGTTATTCTTGCCTTCTTCCTTCGATACCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTTGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTAGACATCTTCGTCAGTACTGTAGATCCAATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGATTATCCAGTTGATAAGATTTCATGTTACGTTTCGGACGATGGAGCTTCCATGCTTACTTTTGAAGCAATGTCTGAAACTGCAGAATTTGCAAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTGAAGGAGCGTCGAGCAATGAAGAGAGAGTACGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAATTCCCACAGAGGGATGGATAATGCAAGATGGAACACCGTGGCCAGGCAACAATACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTAGGTCACAGTGGAGGCCTTGATGCAGAAGGGAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCCGGCGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAGGCCATGTGCTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGACGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATGTAAACAACCCATCTCCGAAAATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTCGGCACAGGGTGTGTGTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGAAAAAAGCTCAAGAACTCTAAGAGTGGGGTGGATGGAGATGTTGCAGTACTGGCAGATGACAAGGAGCTACTGATGTCACAAATGAATTTCGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCTACTTTGATGGAAGAAGGTGGTGTTCCACCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTAATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGAACCGAGTTGGGCTGGATTTATGGATCTATCACAGAAGATATTCTAACAGGCTTCAAAATGCATTGTCGTGGCTGGAGATCCATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGTTGAACCAGGTGCTTCGGTGGGCACTTGGGTCTATTGAAATCTTTTTCAGCAACCATTGCCCCGTTTGGTATGGCTATAAGGGCGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCGATACCACTTCTCGCCTATTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACCTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGAATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAAGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCCCATCTATTTGCTGTTATACAAGGTCTGTTGAAGGTATTGGCTGGAATTGATACTAGCTTTACAGTTACATCCAAGGCAACAGACGACGAAGACTTTGGAGAATTATATGCCTTCAAATGGACAACCCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTGGGAGTTGTTGCAGGAATCTCAGATGCCATAAACAATGGGTATCAATCATGGGGACCTCTCTTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTTTACCCATTCCTCAAGGGTCTGATGGGCCGCCAAAACCGCACACCGACAATAGTCGTCATATGGTCTGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCCGATACCAAGAAATGTGGACTAAATTGCTGA 3003 43.69 MVICLLPAMNLAMSMKEEKEAKIVLSVKLDIRDSKVKLEQRTVQCNAIRITRSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDEENAQYGRSQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSTRWDEKREEGWKDRMDDWKLQQGNLGPEPDDGCDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKIPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDVNNPSPKINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKNSKSGVDGDVAVLADDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVIQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19790598 19795719 - MELO3C003916.2.1 Cme05g01222 328285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01222 1000 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 40 1000 - -
Cme05g01222 1000 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 40 1000 - -
Cme05g01222 1000 SUPERFAMILY Nucleotide-diphospho-sugar transferases 301 824 IPR029044 -
Cme05g01222 1000 MobiDBLite consensus disorder prediction 105 123 - -
Cme05g01222 1000 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 393 586 IPR029044 -
Cme05g01222 1000 Pfam Cellulose synthase 288 994 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme05g01222 1000 MobiDBLite consensus disorder prediction 95 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01222 Cme-Chr5:19790598 Cme08g01623 Cme-Chr8:16699527 0 dispersed
Cme11g00611 Cme-Chr11:6907519 Cme05g01222 Cme-Chr5:19790598 0 dispersed
Cme11g00836 Cme-Chr11:10966650 Cme05g01222 Cme-Chr5:19790598 2.45E-139 dispersed
Cme11g00837 Cme-Chr11:10988103 Cme05g01222 Cme-Chr5:19790598 5.71E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01222 K10999 - csv:101214842 1889.39