Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01223 ATGGCGGCCAAAACTGAAGGCAAAGCCATTGGCATCGACCTCGGCACCACCTACAGCTGCGTCGGTGTTTGGCTCAATGATCGTGTTGAAATTATCCCCAATGATCAAGGTAACCGAACCACTCCTTCTTATGTAGCTTTCACTGATACTGAGCGTTTGATTGGCGATGCCGCCAAGAATCAAGTCGCTATGAATCCTCAGAACACTGTCTTCGACGCCAAGCGTTTGATCGGCCGACGACTTTCTGATCCGTCTGTTCAGAGTGATATGAAGCTCTGGCCATTCAGAGTGGTTGCCGGACCAGGAGACAAGCCGATGATCGTTGTCACGTATAAAGGTGAAGATAAACAGTTTGCTCCGGAGGAGATTTCTTCTATGGTTTTGACCAAGATGAAGGAGATCGCTGAAGCTTTTCTAGGGCAAACTATCAAGAACGCGGTAATTACAGTACCTGCTTATTTCAACGATTCACAAAGACAAGCGACGAAAGATGCCGGTGCGATTGCTGGTCTCAACGTGATGCGTATCATCAATGAACCAACGGCGGCGGCGATTGCGTACGGATTAGACAAAAAAGCCTCCCGTAGAGGTGAACAGAACGTGCTGATCTTCGATCTTGGCGGTGGAACTTTCGATGTGTCCCTTTTGACAATAGAAGAGGGGATTTTCGAGGTGAAAGCCACTGCCGGCGATACACATCTTGGCGGAGAAGATTTCGACAACAGACTTGTGAATCATTTCGTTTCAGAATTCAAGCGGAAGAACAAGAAGGATATTAGCGGAAATGCTAGGGCATTGAGGAGGTTGAGGACGGCGTGTGAACGAGCGAAACGAGCGTTGTCGTCAACGACACAAACAACGATTGAAGTCGATTCCTTGTACGAAGGGATCGATTTCTATGCAACGATAACAAGGGCTAGATTTGAAGAACTGTGTATGGATATGTTCATGAAGTGTATGGAGCCAGTGGAGAAATGTATTCGTGATGCTAAAATTGACAAGAGTCAAGTTCATGAGGTGGTTTTGGTTGGTGGATCTACTAGAATTCCCAAAGTTCAACAGCTTTTGCAAGATTACTTCAATGGAAAGGAGCTTTGCAAAAGTATCAATCCGGATGAAGCTGTCGCTTATGGAGCTGCTGTTCAGGCTGCAATTCTAAGTGGAGAAGGAGACGAGAAAGTTCAAGACCTTCTACTCCTCGACGTCACGCCTCTAAGTCTCGGCCTAGAGACAGCCGGCGGTGTAATGACAGTCTTAATACCAAGGAACACAACAATCCCAACAAAGAAAGAACAAATCTTCTCAACATATTCAGACAACCAGCCAGGTGTTCTAATCCAAGTATACGAAGGGGAGCGAGCAAGAACCAAAGACAACAACCTCCTCGGAAAATTCGAGCTAACCGGCATTCCTCCAGCACCAAGAGGTGTGCCACAAATCAATGTGACTTTCGACATAGATGCAAACGGCATACTTAACGTATCGGCAGAGGACAAAACCGCAGGAGTGAAGAACAAGATAACGATCACGAACGACAAGGGAAGAATGAGCAAAGACGAAATAGAAAGGCTAGTGAAAGAGGCGGAGAAGTACAAAGCAGAGGATGAAGAAGTGAAGAAGAAGGTTGAAGCTAAGAATGCATTGGAGAACTATGCATATAATATGAGGAATACTGTGAGGGATGAGAAGTTTGCTGGGAAATTGAATCCTGATGATAAGCAAAAGATTGAGAAATCAGTGGAGGAGACAATTGAATGGTTGGATAGGAATCAGTTGGCTGAGGTTGATGAGCTTGAAGACAAGCTGAAGGAGCTCGAGGGAGTTTGTAATCCCATCGTTGCTAAGATGTATCAGGGCGGTGCAGGCGGCGGTGTTCCGATGGGCGATGATGTGCCCGGAAGTGGCTCAGGCCAGTCCGGCGGGGCTGGACCGAAGATTGAGGAGGTTGATTGA 1953 46.75 MAAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDPSVQSDMKLWPFRVVAGPGDKPMIVVTYKGEDKQFAPEEISSMVLTKMKEIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRRGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVSEFKRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDMFMKCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVTFDIDANGILNVSAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTVRDEKFAGKLNPDDKQKIEKSVEETIEWLDRNQLAEVDELEDKLKELEGVCNPIVAKMYQGGAGGGVPMGDDVPGSGSGQSGGAGPKIEEVD 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19797789 19800462 - MELO3C003917.2.1 Cme05g01223 328286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01223 650 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cme05g01223 650 Gene3D Actin; Chain A, domain 4 235 318 - -
Cme05g01223 650 Coils Coil 266 286 - -
Cme05g01223 650 Coils Coil 588 608 - -
Cme05g01223 650 MobiDBLite consensus disorder prediction 619 650 - -
Cme05g01223 650 Coils Coil 514 545 - -
Cme05g01223 650 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 8 21 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 36 48 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 58 66 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 146 166 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 209 219 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 337 353 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 369 389 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 396 415 - -
Cme05g01223 650 PRINTS 70kDa heat shock protein signature 477 493 - -
Cme05g01223 650 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cme05g01223 650 Gene3D - 545 619 IPR029048 -
Cme05g01223 650 PANTHER HEAT SHOCK PROTEIN 70KDA 1 625 IPR013126 GO:0005524|GO:0140662
Cme05g01223 650 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Cme05g01223 650 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cme05g01223 650 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Cme05g01223 650 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cme05g01223 650 Gene3D - 71 126 - -
Cme05g01223 650 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 1 625 - -
Cme05g01223 650 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cme05g01223 650 Gene3D - 10 384 - -
Cme05g01223 650 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Cme05g01223 650 Gene3D - 192 366 - -
Cme05g01223 650 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01500 Cme-Chr4:21495153 Cme05g01223 Cme-Chr5:19797789 2.21E-83 dispersed
Cme05g01223 Cme-Chr5:19797789 Cme09g00508 Cme-Chr9:4915047 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01223 K03283 - csv:101215564 1179.85