Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01224 ATGGCGAAAGGAGGAGCTCAGAAGAAAGATGTTGCAGTAGCGATCGACAAAGACAAATGCAGTCAATACGCTTTGAAATGGACAATCGAACGGCTTCTGAGCAGAGGTCAAGTTGTCACTCTCCTTCATGTTAAACAAAAACCGTCTTCTTCTGCACATTCGACGGCATTGAATAAACAGCATATTGAAAATCATGCGAAAGATCAGTTCTTCCTTCCATTTCGTTGCATTTGTACAAGAAGCAATATACCATGCAATGAGGTGATGTTAGAGGAAGGAGAGATTCCAAAGGCATTAATAAATCATGTCTCCAAAAATGTTATAGACATTTTAGTACTTGGTGCTCCTACAAGATCAATTTACAAGAGATTCAAGTCTGATATCCCAAGTATGGTATCAAAAGGAGCACCAGATTTTTGTACAGTTTACATTATTGCCAACAAAGGCAAGGTAACGGTGAAACAATCCACAGCTCCAGCTCCAGCGAAGCCTGTTGCTTCGCCGCGCACCCAGATACAACCTCCCCCACCACGCCCTCAACTTCTACATCAGCTCACAAACGCCTCCGAAGTCTCGTCGTCCGAAACGAACAAATCATGCTCTCAATCAGGTTTAGAGACTCAAATTAGCATAAAAAAGGTTCCTCTTCCTTCCTTTCAAGAAGATTGGGACATCAAGTCACCGTTTACAAGACCAGGTTCAAGGGCGTCGATGAGTAAAGTGATGGATCCATTAATGGTAGATTCTGACATATCCTTCGTTAGCAGCGGAAGGCGGAGCACGGATTATTGCTTATCAGGGGCATGGAACTCCAACATCGCCACCGGTGGCGATTCCTTTCGCCTTTCTAACGCCTCTGAGTTTGAAGTGTTCAGCCCAGGTCCAACGTCGCCATTAATGCTGGAAATGGGAGAAGGAACCAACAAATCTGTTGATAGTAATACTAATGATAATTATAACGACAACACCCATTCTTTCCCTCAGGATATGTCTTTTTGCTCTTCACCAAGTGAAACCTTCTCTTGGCCTTCTCACTCTCAAACTCAGGATGATGTTGAAGCTGAGATGAGAAGGTTGAAATTAGAGCTCAAACAAACCATGGACATGTATAGTACTGCCTGCAAAGAAGCCATAACCGCCAAACAGAAGGCAATGGAGCTCCATCGCTGGAAAGTTGAAGAAGAACAGAGGTTAGAAGCGGCGAGAATGGCGGAGGAAGCAGCATTAGCAATGGCAGAGAAGGAGAAGATAAAATGTAAAGCAGCGATGGAGGCAGCCGAAGCCGCACAAAGGAATGCAGCGCTCGAGGCTAAGAAACGAGCCAGAGTAGAGAAAATGGTGGACATGGAAGCACAAGAAATGAAACGAACACTGTCATTTTCAGGATACGGTCAAGCTGAAATCGGTTACAGAAAGTACACAATCCAAGAAATCGAAACCGCCACAAAAGGCTTCTCCGATTCTTTGAAGATCGGTGAAGGCGGTTACGGTCCGGTCTTCCGTGGAGAACTCGACCACACGCCGGTGGCGATCAAGGTTCTTCGACCGGATGCCGCTCATGGACGATCTCAATTTCAACAAGAGGTTGAAGTTCTAAGTTGTATTCGACATCCAAACATGGTTCTCCTTCTCGGAGCTTGTCCTGAAAAGGGTTGTTTAGTTTACGAATTCATGGCAAATGGAAGCTTAGAAGATTGTCTCTTCCGAAAAGCCAACGATCCCATTCTCTCATGGCAATTACGATTCCGAATCGCAGCAGAGATCGCAACCGGACTTCTCTTCCTACATCAAACCAGACCAGAACCAATAGTACACCGTGATCTGAAACCCGGAAACATTTTGCTAGATAGTAACTACGTGAGCAAAATCAGCGACGTCGGACTGGCGAGGCTAGTTCCTCCATCAGTAGCCGACTCAGTAACTCAGTATCGGATGACAGCGACGGCAGGGACATTCTTCTACATCGATCCAGAGTATCAACAAACGGGATTACTGGGGATTAAATCAGACATTTATTCACTGGGAGTGATGCTTCTGCAGATTATCACAGCAAGACCGCCGATAGGACTAGCGCATGCGGTGGAAAGGGCAATTGAGAAGGGGAAATTCGCAGAGATACTAGATCCAGAGGTGAAGGATTGGCCGGTTGAAGACGCGTTGAAGTTCGCGAAGCTTTCGATTAAGTGTGCGGAGATGAGGAAGAGAGATCGGCCAGACCTTGGGAAGGTGGTGTTGCCGGAGCTGAATCGACTGAGAACAATGGCGGAAGAGAGTATGGGACTTGGGTCGTTCTGCTGTAGTAGTACGAGTTCTTCTCCATATGCAAGCCAGACTTCTCAGGTAATTTCATTTTGGAAAAGTAAATGCCTAATTTAA 2376 45.75 MAKGGAQKKDVAVAIDKDKCSQYALKWTIERLLSRGQVVTLLHVKQKPSSSAHSTALNKQHIENHAKDQFFLPFRCICTRSNIPCNEVMLEEGEIPKALINHVSKNVIDILVLGAPTRSIYKRFKSDIPSMVSKGAPDFCTVYIIANKGKVTVKQSTAPAPAKPVASPRTQIQPPPPRPQLLHQLTNASEVSSSETNKSCSQSGLETQISIKKVPLPSFQEDWDIKSPFTRPGSRASMSKVMDPLMVDSDISFVSSGRRSTDYCLSGAWNSNIATGGDSFRLSNASEFEVFSPGPTSPLMLEMGEGTNKSVDSNTNDNYNDNTHSFPQDMSFCSSPSETFSWPSHSQTQDDVEAEMRRLKLELKQTMDMYSTACKEAITAKQKAMELHRWKVEEEQRLEAARMAEEAALAMAEKEKIKCKAAMEAAEAAQRNAALEAKKRARVEKMVDMEAQEMKRTLSFSGYGQAEIGYRKYTIQEIETATKGFSDSLKIGEGGYGPVFRGELDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPEKGCLVYEFMANGSLEDCLFRKANDPILSWQLRFRIAAEIATGLLFLHQTRPEPIVHRDLKPGNILLDSNYVSKISDVGLARLVPPSVADSVTQYRMTATAGTFFYIDPEYQQTGLLGIKSDIYSLGVMLLQIITARPPIGLAHAVERAIEKGKFAEILDPEVKDWPVEDALKFAKLSIKCAEMRKRDRPDLGKVVLPELNRLRTMAEESMGLGSFCCSSTSSSPYASQTSQVISFWKSKCLI 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19805120 19810315 + MELO3C003918.2.1 Cme05g01224 328287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01224 791 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 7 781 - -
Cme05g01224 791 Gene3D HUPs 9 146 IPR014729 -
Cme05g01224 791 Pfam Protein kinase domain 488 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01224 791 Coils Coil 349 369 - -
Cme05g01224 791 Gene3D Transferase(Phosphotransferase) domain 1 558 761 - -
Cme05g01224 791 SMART serkin_6 485 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01224 791 PANTHER OS02G0152300 PROTEIN 7 781 - -
Cme05g01224 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Cme05g01224 791 MobiDBLite consensus disorder prediction 155 182 - -
Cme05g01224 791 Coils Coil 395 432 - -
Cme05g01224 791 Pfam Universal stress protein family 10 123 IPR006016 -
Cme05g01224 791 Gene3D Phosphorylase Kinase; domain 1 465 557 - -
Cme05g01224 791 CDD STK_N 11 149 - -
Cme05g01224 791 ProSiteProfiles Protein kinase domain profile. 485 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01224 791 SUPERFAMILY Protein kinase-like (PK-like) 462 744 IPR011009 -
Cme05g01224 791 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01407 Cme-Chr3:23519130 Cme05g01224 Cme-Chr5:19805120 0 dispersed
Cme03g01705 Cme-Chr3:25699444 Cme05g01224 Cme-Chr5:19805120 7.91E-40 dispersed
Cme05g01224 Cme-Chr5:19805120 Cme05g02054 Cme-Chr5:28851775 9.21E-08 dispersed
Cme05g01224 Cme-Chr5:19805120 Cme04g00320 Cme-Chr4:2501637 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64895 PF00069 Pkinase 1.00E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01224 - - csv:101203771 1267.68