Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01238 ATGGCTTTCTCTGCTACAAAATCTAGTTCTACCTTTTCTCTATTTTCAATGCTTCTTGCTTCTATTGTTACTAAGTTCATATTTCCAATGTCTCCACTTGCTTTTGGAGTAACTATCTTCCTTGTACCTCTCCTCACTTATATTATCTCTTCCATGGCCTTCCCCTCTAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATTTTTGGCAATTGGCTCCAAGTTGGTAACGATCTCAACCATCGTTTACTTGCTTCCTTGTGCAAGAGATTTGGCTCCATATTCCTCTTGAAGCTTGGCTCCAAGAACCTTGTAGTTGTGTCTGATGCCGAGCTTGCTAGCCAAGTTCTCCATGCTCAGGGTGTCGAGTTTGGCTCTCGTCCTCGTAATGTTGTGTTTGATATCTTCACTGGGAATGGTCAGGATATGGTGTTTACGGTTTATGGAGACCATTGGCGTAAGATGCGTAGAATCATGACGTTACCGTTTTTTACAAATAAAGTGGTGCATAATTATAGTGGCATGTGGGAGGATGAGATGGACTTTGTGGTTCGTGACCTTAAGAGTAACAAGAAGTTTCAATCAGAAGGGATAGTGATCCGAAAGCGTTTGCAGTTAATGTTGTACAATATCATGTATAGAATGATGTTTGATGCAAAGTTTGAGTCTCAAGATGATCCTTTGTTCATCGAAGCAACTCGATTCAACTCAGAAAGGAGTCGATTGGCACAAAGCTTCGAGTACAACTATGGAGATTTTATTCCTCTTCTCAGACCCTTTTTGAGAGGCTACTTGAACAAGTGTAGGGATTTGCAAAGCAGACGGTTGGACTTTTTCAACAAAAACTATGTTGAAAAAAGAAGAAAGATAATGGCTGCTAATGGAGATAAACACAAGATAACTTGTGCCATGGATCATATCATAGATGCTCAATTGAAAGGTGAGATAAGTGAAGAGAATGTGATTTACATCGTAGAGAACATCAACGTGGCTGCGATAGAAACAACGCTATGGTCAATGGAATGGGCAATAGCCGAGCTAGTGAATCATCCCGAAATCCAACACAAGATCCGAGAGGAGATTGCTAATGTCCTAAAAGGAAAGGAAGTGACTGAATCAAACCTTCATGAATTGCCATACTTACAAGCAACAGTGAAAGAAACACTTAGGTTGCACACTCCAATACCGTTGTTAGTGCCACATATGAACTTGGAAGAGGCGAAACTTGGAGGATACACCATTCCAAAGGAATCCAAGGTGGTGGTGAATGCATGGTGGCTAGCTAATAATCCCGAGTGGTGGAAAAATCCAGAGGAGTTTAGGCCAGAGAGGTTCTTCGAAGAAGAAAATGGAATTGAAGCTGTTGCTGCAGGAAAAGTGGATTATCGATTCTTACCCTTTGGAGTTGGAAGGAGGAGTTGTCCTGGAATTGTTTTGGCAATGCCAATCTTAGGACTCATTGTTGCCAAGTTGGTTTCGAAGTTTGAAATGAAGCCTCCTGGTGGGATGGATAAGATTGATGTCACAGAAAAAGGAGGACAATTCAGTCTGCATATCGCCAACCATTCAACCGTTGTTTTTAACCCCATTAATACTTAA 1596 41.6 MAFSATKSSSTFSLFSMLLASIVTKFIFPMSPLAFGVTIFLVPLLTYIISSMAFPSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEDEMDFVVRDLKSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMAANGDKHKITCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQHKIREEIANVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEENGIEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPGGMDKIDVTEKGGQFSLHIANHSTVVFNPINT 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20022527 20024507 + MELO3C003932.2.1 Cme05g01238 328301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01238 531 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Cme05g01238 531 SUPERFAMILY Cytochrome P450 59 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 9 530 - -
Cme05g01238 531 PANTHER OS02G0467000 PROTEIN 9 530 - -
Cme05g01238 531 Pfam Cytochrome P450 59 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01238 531 Gene3D Cytochrome P450 52 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01238 Cme-Chr5:20022527 Cme05g01240 Cme-Chr5:20040928 0 dispersed
Cme05g01238 Cme-Chr5:20022527 Cme05g01239 Cme-Chr5:20028799 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01238 K00487 - csv:101204747 1030.01