Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01240 ATGGCTTCCAATGCCTTGTTTTCTCTCTCTTCAATGCTTCTTGTTTCTCTTGTTTCTAAGTTCATATTCCCCATGTCACCACTTGCTTTTGGAGTAACTATCTTCCTTGTTCCTCTCCTTACCTATATCATCTCTTCCATGGCCTTCTCCTCCAAGCTTCCTCCTGGCCCTCTCTCCCTTCCCATCTTTGGCAATTGGCTCCAAGTTGGCAATGACCTCAACCATCGCCTACTTGCTTCCTTGTGCAAGAGATTTGGTTCCATATTTCTCTTGAAGCTTGGTTCCAAGAACCTCGTTGTCGTGTCCGATGCCGAGCTTGCTAGCCAAGTTCTCCATGCTCAAGGTGTTGAGTTTGGCTCTCGTCCTCGTAATGTTGTGTTTGACATCTTCACTGGAAATGGCCAAGATATGGTGTTTACAGTTTATGGAGATCACTGGCGTAAGATGCGTAGAATCATGACTTTGCCGTTTTTTACAAACAAAGTGGTGCATAATTATAGCGGCATGTGGGAGGATGAGATGGATTATGTGGTTCGTGACCTTAACAGTAACAAGAAGTTTCAATCAGAAGGAATAGTAATCAGAAAGCGTTTGCAATTAATGTTATACAACATTATGTATAGAATGATGTTTGATGCAAAGTTTGAGTCTCAAGATGATCCTTTGTTCATTGAAGCAACTAAATTCAACTCGGAAAGAAGTCGATTAGCACAAAGTTTTGAATACAACTATGGAGATTTCATTCCTCTTCTTAGACCTTTCTTAAGAGGTTACTTGAACAAGTGTAGAGATTTGCAGAGCAGGAGGTTGGACTTTTTCAACAAAAACTATGTGGAAAAAAGAAGGAAAATAATGGCTACCAATGGAGATAAGCACAAGATAACTTGTGCCATGGATCATATCATAGATGCTCAATTGAAAGGTGAGATAAGTGAAGAGAATGTGATTTACATCGTAGAGAACATCAACGTGGCAGCGATAGAAACAACACTATGGTCAATGGAATGGGCAATAGCCGAGCTAGTGAATCATCCTGAAATCCAACACAAGATTAGAGAGGAGATTGCTAATGTCCTAAAAGGAAAGGAAGTAACTGAATCTAACCTTCACGAATTACCATACTTACAAGCAACAGTGAAAGAAACACTTAGGTTGCACACTCCAATACCATTGTTAGTACCACATATGAACTTGGAAGAGGCAAAACTTGGAGGGTTCACCATTCCAAAGGAATCCAAGGTGGTAGTAAATGCATGGTGGCTAGCTAATAACCCCGAGTGGTGGAAAAATCCAGAGGAGTTTAGGCCTGAAAGGTTCTTCGAAGAAGAAAGTGGAACAGAGGCAATTGCAGCAGGAAAAGTGGATTATCGATTTTTACCTTTTGGAGTTGGAAGGAGGAGTTGTCCTGGAATTGTTTTGGCAATGCCAATTTTAGGTCTTCTTGTTGCCAAGTTAGTTTCAAAGTTTGAAATGAAACCTCCAACTGGGATGGAGAAGATTGATGTCACGGAGAAAGGAGGACAATTCAGCCTACATATAGCCAATCACTCCACGGTCGTTTTTAACCCCATGATTGCTTAA 1581 40.99 MASNALFSLSSMLLVSLVSKFIFPMSPLAFGVTIFLVPLLTYIISSMAFSSKLPPGPLSLPIFGNWLQVGNDLNHRLLASLCKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEDEMDYVVRDLNSNKKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATKFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMATNGDKHKITCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQHKIREEIANVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAIAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLLVAKLVSKFEMKPPTGMEKIDVTEKGGQFSLHIANHSTVVFNPMIA 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20040928 20042773 + MELO3C003933.2.1 Cme05g01240 328303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01240 526 Pfam Cytochrome P450 54 514 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Cme05g01240 526 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 6 524 - -
Cme05g01240 526 SUPERFAMILY Cytochrome P450 54 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 Gene3D Cytochrome P450 48 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 82 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 106 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01240 526 PANTHER OS02G0467000 PROTEIN 6 524 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01238 Cme-Chr5:20022527 Cme05g01240 Cme-Chr5:20040928 0 dispersed
Cme05g01240 Cme-Chr5:20040928 Cme11g01682 Cme-Chr11:24892758 0 dispersed
Cme05g01239 Cme-Chr5:20028799 Cme05g01240 Cme-Chr5:20040928 0 tandem
Cme05g01240 Cme-Chr5:20040928 Cme05g01241 Cme-Chr5:20045273 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01240 K00487 - csv:105434566 1006.9