Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01241 ATGGGCCATTCTGCAGCAAAGTTTGGTTTCATTTGCTCAGTCTCAGCACTAGCTTTGGGGTTGCTCACCAAGTTCACTTTCCCCAGTTTCTTCTTGTCCATCTCCCCAAACATCCTTCCAATCACTCTTTCCATTTCACTTGTTTTTGCTTTCATCTTCTTTGCCATATCCAATTCATCCAATAATCCTCCAGGTCCTCTCCCTGTACCCATCTTTGGGAATTGGCTCCAAGTTGGCAATGATCTCAACCATCGCTTACTTGCTTCATTGTCACAAAAATACGGCTCTGTCTTCCGACTCAAACTTGGTTACAAAAATCTAGTTGTGGTGTCAGATGCGGAGCTTGCTAACCAAGTCCTTCATGCTCAAGGTGTAGAGTTTGGATCCCGTCCCCGAAACGTAGTCTTCGACATTTTCACGGGTAATGGACAAGATATGGTGTTCACCATTTATGGCGACCATTGGCGTAAAATGCGTAGAATTATGACACTGCCATTTTTTACAAATAAAGTTGTGCATAACTACAGTGGGATGTGGGAGGAAGAAATGGATTTGGTTGTTTGCGATCTTATGAACAACCCAAAGGTGAAATCGGAAGGGTTGGTCATAAGAAAGCGTTTGCAATTAATGTTGTACAACATCATGTATAGAATGATGTTTGATACCAAGTTTGAATCTCAAGATGATCCTTTATTCATTGAGGCAACTCGATTCAACTCTGAAAGAAGTCGATTGGCACAAAGTTTTGAATACAATTACGGAGATTTCATTCCTTTGCTTAGACCCTTTTTGAGGGGTTACTTGAACAAATGCAAGGATTTGCAGAGCAGGAGGTTGGCATTTTTCAACAATAACTATGTTGAGAAAAGAAGAAAAATTATGACTGCCAATGGAGAAAAGCACAAAATAAGCTGTGCCATGGATCATATTATAGATGCTCAGCTACAAGGAGAAATTAGTGAAGAAAATGTGATATACATTGTGGAAAATATTAATGTTGCAGCAATAGAGACGACACTTTGGTCAATGGAATGGGCAATAGCTGAGTTGGTAAACCATCCAACTGTGCAACAAAAAATCCGAGAGGAAATCTCGACTGTCCTAAAAGGAAAGGAAGTAACTGAATCTAACTTACACAAGTTACCGTATCTGCAAGCCACAGTGAAAGAGACATTGAGACTGCACACACCAATACCTTTATTAGTACCACATATGAACTTGGAAGAAGCCAAGCTTGGAGGCTACACAATTCCAAAAGAGTCTAAGGTGGTAGTAAATGCATGGTGGTTGGCCAATAACCCAGCATGGTGGAAAAATCCAGAGGAATTCAGGCCAGAGAGGTTCCTACAAGAAGAAAATAGCACGGAAGCTGTAGCAGGAGGCAAAGTCGACTTCCGATTTTTACCGTTCGGCGTTGGAAGAAGAAGTTGCCCTGGAATAGTTTTGGCACTGCCAATCTTAGGATTGATCATTTCAAAATTGGTCACCAATTTTGAAATGAAGCCTCCGATTGGGATGGAGAAGATTGATATGAGCGAAAAAGGAGGACAATTCAGTTTGCATATTGCCAACCACTCAACTGTGACATTCAAACCTATGACTGCTTAG 1608 41.11 MGHSAAKFGFICSVSALALGLLTKFTFPSFFLSISPNILPITLSISLVFAFIFFAISNSSNNPPGPLPVPIFGNWLQVGNDLNHRLLASLSQKYGSVFRLKLGYKNLVVVSDAELANQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTIYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEEEMDLVVCDLMNNPKVKSEGLVIRKRLQLMLYNIMYRMMFDTKFESQDDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLAFFNNNYVEKRRKIMTANGEKHKISCAMDHIIDAQLQGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPTVQQKIREEISTVLKGKEVTESNLHKLPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFLQEENSTEAVAGGKVDFRFLPFGVGRRSCPGIVLALPILGLIISKLVTNFEMKPPIGMEKIDMSEKGGQFSLHIANHSTVTFKPMTA 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20045273 20047231 + MELO3C003934.2.1 Cme05g01241 328304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01241 535 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PANTHER OS02G0467000 PROTEIN 6 534 - -
Cme05g01241 535 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 115 136 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 6 534 - -
Cme05g01241 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Cme05g01241 535 Gene3D Cytochrome P450 56 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 SUPERFAMILY Cytochrome P450 63 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme05g01241 535 Pfam Cytochrome P450 63 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01239 Cme-Chr5:20028799 Cme05g01241 Cme-Chr5:20045273 0 dispersed
Cme05g01241 Cme-Chr5:20045273 Cme11g01682 Cme-Chr11:24892758 0 dispersed
Cme05g01240 Cme-Chr5:20040928 Cme05g01241 Cme-Chr5:20045273 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01241 K00487 - csv:101205775 1021.54