Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01243 ATGAAGACGCCGGCGAATGGTGCCGCCGGTGCCGCCGCCGCTCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTACCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGTCATAGCGAACAGGTGAGCCGCTACGGCGGTGGCGGCGCCTTTCTCGTAGCGGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCCAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGATCCAGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATATTCCCTGCTCTTGATTTCTCAATGCAACCCCCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACCGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTTATAAGAGATGAAAAACAACAGCTTCTATTGGGTATTAGGCGAGCAAACAGGCAACCGACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCACATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCAAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTGGCCAAATATTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGAATGCGCTTCAGAATGATGTTTGAAACTGAAGAGTCTGGAACCAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTTCGATGGAAGGGCTCACAGTGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGGCGTAATCGAGTCTCCATATGGGAGATCGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCGAAACGACCGAGGCAACCGGGAATGCCAGATGACGACTCCTCCGATTTGGATGGTATATTTAAAAGATCAATGTTTGGGGACGACTTTTGCATGAAAGATCCACAGGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATTCAATGCAGCCAAATTATATGCATTCGTTTTCCGGGTCTATGCTTCCAAACCTTGGTGGTGTTGATATTTCTCGACAACTTGGTTTGTCAAATGCACAACTTCCACAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGACAAGTATGAACTCGTTGGGGTCTGTTGTGCAGCCACCACAGCAGTTGGATGATATGTCTCAGCAGACACGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTAATGGGATCCTACAACAGCAAACTGCTTTGCAAAATCAGCAGCTTCAGAGAAATGCCCCTCAGAATTTGCAAATGCAGCAGCATCAGCAAATTTTGGGTCAGAATCAACAACAGAATATGAATCCGTCACCACACCCGGAACAGTTGAATCATCAGTTGCAAATGTCAGACAATCAAGTTCAAATACAGATGTTGCAGAAGTTTCAACAGCAGCAATCGATTTTGGCTCAGCAGTCTGCTCTTCAGCCTACTCAACTCACCCAACTACCGGATCAGCAGAGACAGTCGGTAGATGCGTCCCAAAGCTTTTCGAGGTCCATGTCATCTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGGCCCTCCACCAAATGCATTATCACAGCAGGCAGCAAATTGCAATGGCCAGACGAATAATCGGTTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAACTACAGCAACCACCTTCATCTACTGTACTTTCTGATATTTCTAGGCCAATGGGACTTCCTCCTGCCCAAATAAACAATCAGCTCTCTGCAGCTACAAGTAGTTTAGTAACAGGAGCAGCAGGAGCTGGCCAATCTGGAATCACGGACGACATTCCGTCGTGCTCCACGTCACCTTCCACGAACAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACAGGATTGGTTGAGGATGTTGCTCAATCAGCTGCAACGATATTCAGTTCAAATACATTGGATAACATGTCACCAAATGCCAACTTAGTTCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAACATTTCCAAGAATCAAAGCCATGGAATTTTTGCTCAACAAACTTTCTTAAGTGGTGTTGTTGCTCAAACGGATTTCTTGGATACGTCCTCCTCTACAACCTCGGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTTCTCAAGATTTGGAAGTACCAACCGATCTCCATAACATTCCGTACGGGAATCACGTCGATGGACAAATGGTAGCGCAGTTAAGTTCCGATCCTTTGTTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTCTCTTCTGGGGCCATGCTCACCACCTATGATACACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAACTCCATGGATTCGACGATAAGCGATAACGCCTTCTTGAATAGAAACCAATGGGCCCCTCCGCCTCCATTCCAGCGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTCGGGAGATCTATTGATATCACCCGTTACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATTGAGGGACAATTAGAGGACAGGCAAAAGATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTGCTCGTAGGGGACGACCCTTGGGATGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGACGGAGATATCGGTAATGGGCTCAAAGTTCATAGTGTCGAATATCAGTATGGCTACGATTTCCCGTTGCAAGAATATTGTAGCAATGGAGGAGATATAGCCAGCCAACACTCAGCATTGGCTTTTTGGCCATTGTCTGGTTAA 3429 45.44 MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVSRYGGGGAFLVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRSMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSNAQLPQSNNIQFNAQRLLSQAQQLDQLPKLPTSMNSLGSVVQPPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTNGILQQQTALQNQQLQRNAPQNLQMQQHQQILGQNQQQNMNPSPHPEQLNHQLQMSDNQVQIQMLQKFQQQQSILAQQSALQPTQLTQLPDQQRQSVDASQSFSRSMSSNQMLDIPQSTPAAGPPPNALSQQAANCNGQTNNRFSNQHLQPKLPQLQQPPSSTVLSDISRPMGLPPAQINNQLSAATSSLVTGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDNMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDSSQDLEVPTDLHNIPYGNHVDGQMVAQLSSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDTQKDPQQEISSSIVSQSFGIPDMTFNSMDSTISDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWDDFVNCVRSIKILSPQEVQQMSLDGDIGNGLKVHSVEYQYGYDFPLQEYCSNGGDIASQHSALAFWPLSG 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20106958 20115108 - MELO3C003938.2.1 Cme05g01243 328306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01243 1142 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1102 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme05g01243 1142 ProSiteProfiles B3 DNA-binding domain profile. 145 247 IPR003340 GO:0003677
Cme05g01243 1142 MobiDBLite consensus disorder prediction 1 20 - -
Cme05g01243 1142 MobiDBLite consensus disorder prediction 678 700 - -
Cme05g01243 1142 ProSiteProfiles PB1 domain profile. 1005 1090 IPR000270 GO:0005515
Cme05g01243 1142 MobiDBLite consensus disorder prediction 639 671 - -
Cme05g01243 1142 SUPERFAMILY CAD & PB1 domains 1018 1084 - -
Cme05g01243 1142 CDD B3_DNA 144 236 IPR003340 GO:0003677
Cme05g01243 1142 Gene3D - 1001 1094 - -
Cme05g01243 1142 MobiDBLite consensus disorder prediction 506 528 - -
Cme05g01243 1142 Pfam B3 DNA binding domain 145 246 IPR003340 GO:0003677
Cme05g01243 1142 MobiDBLite consensus disorder prediction 574 605 - -
Cme05g01243 1142 Gene3D - 309 379 - -
Cme05g01243 1142 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme05g01243 1142 Gene3D - 143 246 IPR015300 -
Cme05g01243 1142 SMART B3_2 145 247 IPR003340 GO:0003677
Cme05g01243 1142 MobiDBLite consensus disorder prediction 639 700 - -
Cme05g01243 1142 Pfam AUX/IAA family 1003 1090 IPR033389 -
Cme05g01243 1142 PANTHER AUXIN RESPONSE FACTOR 1 1102 - -
Cme05g01243 1142 SUPERFAMILY DNA-binding pseudobarrel domain 134 274 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01243 Cme-Chr5:20106958 Cme05g02083 Cme-Chr5:29030924 0 dispersed
Cme05g01243 Cme-Chr5:20106958 Cme08g00111 Cme-Chr8:821892 4.66E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41358 PF02309 AUX_IAA 4.70E-07 CL0072 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01243 - - csv:101205542 1972.98