Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01277 ATGGAGAACATTCTGGATGAGTATCGCTATTACTGGGAAACCAATATGTTTCTCCAGACGGAAGAATTCGACAGTTGGGGATTAGATGAAGCATTTTATGGTTCTTATGATTCGAGCTCACCGGACGGAACGATGTCATCATTGGAGGCGTCGAAGAATATCTTATCGGAGAGGAATCGGAGGAAGAAGCTTAATGATAGGCTTCTTGCTCTCAGAGCCGTCGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAGGATGCAATTGAGTACATTCAAGAGCTTCGATCAGAAGAGAATCGAATCGAAACCGAGATTTCAAATCTAGAATCAGGCAAATTCAAGAGCACAACATCAAATGAGGACGATGATCGTGAAAACAACAATCGAAATACAAGGAAGAGGGGAACAAAGAATTCTAATCGACAACTACGGGAGAAGCCAACGTCTTTCCCGATCGAAATTCTCGACTTGAACGTGAGTTACATGGGAGAGAAGACGATGGTGGTGAGTATGACGTGTGAAAGAAGAAACGACGCCGTATTGAAAATTTGTCAAGTGATTGAATCTTTGAAGCTGAAGATAATTACGGCCAATATTACCGTCGTTGCCAATAGGCTTCTCAGTACGCTCTTCCTTGAGGTTCAATTCCTTTCCTTTTTAAAACCTTAG 678 41.89 MENILDEYRYYWETNMFLQTEEFDSWGLDEAFYGSYDSSSPDGTMSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRSEENRIETEISNLESGKFKSTTSNEDDDRENNNRNTRKRGTKNSNRQLREKPTSFPIEILDLNVSYMGEKTMVVSMTCERRNDAVLKICQVIESLKLKIITANITVVANRLLSTLFLEVQFLSFLKP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20931824 20934883 - MELO3C003968.2.1 Cme05g01277 328340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01277 225 MobiDBLite consensus disorder prediction 118 135 - -
Cme05g01277 225 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 218 - -
Cme05g01277 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 112 IPR036638 GO:0046983
Cme05g01277 225 Gene3D - 46 114 IPR036638 GO:0046983
Cme05g01277 225 SMART finulus 54 103 IPR011598 GO:0046983
Cme05g01277 225 PANTHER TRANSCRIPTION FACTOR BHLH35 1 218 - -
Cme05g01277 225 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Cme05g01277 225 MobiDBLite consensus disorder prediction 110 146 - -
Cme05g01277 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cme05g01277 225 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01277 Cme-Chr5:20931824 Cme10g00524 Cme-Chr10:3374659 9.92E-17 dispersed
Cme11g02260 Cme-Chr11:29729018 Cme05g01277 Cme-Chr5:20931824 3.17E-14 dispersed
Cme04g01820 Cme-Chr4:25939103 Cme05g01277 Cme-Chr5:20931824 2.35E-09 transposed
Cme05g00811 Cme-Chr5:10420917 Cme05g01277 Cme-Chr5:20931824 7.13E-10 transposed
Cme11g01844 Cme-Chr11:26650243 Cme05g01277 Cme-Chr5:20931824 1.86E-19 transposed
Cme02g01617 Cme-Chr2:23325650 Cme05g01277 Cme-Chr5:20931824 1.87E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41359 PF00010 HLH 6.40E-11 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01277 - - cmo:103492501 379.407