Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01277 | ATGGAGAACATTCTGGATGAGTATCGCTATTACTGGGAAACCAATATGTTTCTCCAGACGGAAGAATTCGACAGTTGGGGATTAGATGAAGCATTTTATGGTTCTTATGATTCGAGCTCACCGGACGGAACGATGTCATCATTGGAGGCGTCGAAGAATATCTTATCGGAGAGGAATCGGAGGAAGAAGCTTAATGATAGGCTTCTTGCTCTCAGAGCCGTCGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAGGATGCAATTGAGTACATTCAAGAGCTTCGATCAGAAGAGAATCGAATCGAAACCGAGATTTCAAATCTAGAATCAGGCAAATTCAAGAGCACAACATCAAATGAGGACGATGATCGTGAAAACAACAATCGAAATACAAGGAAGAGGGGAACAAAGAATTCTAATCGACAACTACGGGAGAAGCCAACGTCTTTCCCGATCGAAATTCTCGACTTGAACGTGAGTTACATGGGAGAGAAGACGATGGTGGTGAGTATGACGTGTGAAAGAAGAAACGACGCCGTATTGAAAATTTGTCAAGTGATTGAATCTTTGAAGCTGAAGATAATTACGGCCAATATTACCGTCGTTGCCAATAGGCTTCTCAGTACGCTCTTCCTTGAGGTTCAATTCCTTTCCTTTTTAAAACCTTAG | 678 | 41.89 | MENILDEYRYYWETNMFLQTEEFDSWGLDEAFYGSYDSSSPDGTMSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRSEENRIETEISNLESGKFKSTTSNEDDDRENNNRNTRKRGTKNSNRQLREKPTSFPIEILDLNVSYMGEKTMVVSMTCERRNDAVLKICQVIESLKLKIITANITVVANRLLSTLFLEVQFLSFLKP | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 20931824 | 20934883 | - | MELO3C003968.2.1 | Cme05g01277 | 328340 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01277 | 225 | MobiDBLite | consensus disorder prediction | 118 | 135 | - | - | |
Cme05g01277 | 225 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 1 | 218 | - | - | |
Cme05g01277 | 225 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 53 | 112 | IPR036638 | GO:0046983 | |
Cme05g01277 | 225 | Gene3D | - | 46 | 114 | IPR036638 | GO:0046983 | |
Cme05g01277 | 225 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983 | |
Cme05g01277 | 225 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 1 | 218 | - | - | |
Cme05g01277 | 225 | Pfam | Helix-loop-helix DNA-binding domain | 55 | 97 | IPR011598 | GO:0046983 | |
Cme05g01277 | 225 | MobiDBLite | consensus disorder prediction | 110 | 146 | - | - | |
Cme05g01277 | 225 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983 | |
Cme05g01277 | 225 | Coils | Coil | 87 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01277 | Cme-Chr5:20931824 | Cme10g00524 | Cme-Chr10:3374659 | 9.92E-17 | dispersed | |
Cme11g02260 | Cme-Chr11:29729018 | Cme05g01277 | Cme-Chr5:20931824 | 3.17E-14 | dispersed | |
Cme04g01820 | Cme-Chr4:25939103 | Cme05g01277 | Cme-Chr5:20931824 | 2.35E-09 | transposed | |
Cme05g00811 | Cme-Chr5:10420917 | Cme05g01277 | Cme-Chr5:20931824 | 7.13E-10 | transposed | |
Cme11g01844 | Cme-Chr11:26650243 | Cme05g01277 | Cme-Chr5:20931824 | 1.86E-19 | transposed | |
Cme02g01617 | Cme-Chr2:23325650 | Cme05g01277 | Cme-Chr5:20931824 | 1.87E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41359 | PF00010 | HLH | 6.40E-11 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01277 | - | - | cmo:103492501 | 379.407 |