Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01290 ATGGCCCCTTCTGAAATCGTGCCGGCATTGTCCGAACCCACGTCGACTACGTCCTCTTCCTCCTGCTCTGGCTCTGTTTTTCATCGGATTTCTGAGGATAAGCGGCAGTTTGTTGATCTTAGAGGTGTACGGTGGCGTATAAATCTTGGGGTTTTGCCGTCTTCTTCTTTGGCTTCTATTGATGATCTTCGTCGCGTCACAGCTGATTCCAGAAGAAGATATGCTATCTTGAGAAGACGCCACCTTGTTGATCCACACGTTTCCAAGGATGGAAGCAGTTCTCCTGATATTGCAATGGATAATCCTCTATCACAAAACCCAGATAGCATGTGGGGTCGCTTCTTTCGGAGTGCTGAGCTGGAGAAAATGGTTGACCAGGATTTATCACGTTTATATCCAGAACATGGAAGCTACTTCCAGACGCCTGGATGCCAAAGCTTGCTTAGAAGAATTTTATTGTTATGGTGCCTTCAACATCCGCAGTTCGGCTATAGACAAGGAATGCACGAACTTTTGGCTCCTCTATTGTATGTTCTTCATGTTGATGTGGAGAGGCTTTCCCAAGTGAGAAAGCTTTATGAAGACCAATTTGCTGACAAGTTTGATGGTCTCTCATTTCAAGATGGTAGTTTCAAATATAATTTCGATTTCAAAAACCGTCTGGATTCAACTGAAGATGAGTTTGGAGCTGATGGAAATGTGGAAAGTGTGAAAAGTCTTTCAGAGCTAGATCCTGAAATACAAACCATTATATTGTTGACTGATGCATATGGAGCCGAAGGGGAACTGGGAATTGTCCTTTCTGATAGATTTATTGAACATGATGCATATACTATGTTTGATGCTTTAATGAGTGGAGCTCATGGGGAAGTTGCAATGGCAGACTTTTACTCTCCAACGCCTGCAGGTGGTTCCCTTTCAGGATTGCCTCCTGTAATTGAAGCGTCTTCTGCTTTATACCACTTGCTGTCACATGTTGATTCATCTCTACATGCTCACCTTGTTGAACTGGGTGTAGAACCTCAGTACTTCTCTCTCCGCTGGTTAAGAGTTTTATTTGGTCGTGAATTTTCGCTTGAAGATCTCTTAACGATTTGGGATGAAATATTTGCTTCAGATAATACCAAATTTGACAGAAGTGATGAACCTGAGACAAGCTCCAGCTTTGGCTTCCTTAGTTCATCTCGTGGTGCATTTATTGCTGCTATTGCGGTTTCTATGTTACTTTATCTGCGATCATCTTTACTTGCCACAGAAAATGCAACTTTATGCCTACAAAGATTGCTAAACTTCCCCAAGAACGTGGATTTGAAAAAACTGATAGAGAAGGCAAAATCTTTGCAGACATTAGCAATGCATTCTAATATCTCGTCGTCACCCTTGTTGTCTGGAGCATATCACCACCACAGCAAGTCTATCGTTGGACGAGGTAATGGCCTTTCATCTGGTTCTGTTTCACCAAAAACTCCGTTAAATCATGTTCCCGAGAGTTACTGGGAGGAGAAGTGGAGAGTTTTACACAAGGAACAAGAATTTAAACAAAGTGGCTCAAAAAGTAAGAATGCAGCCCAAAAGAAAGGATGGTCGGAGAAAGTGAGGTTCCTGTATAGGACGGAATCTGATCCATTTCCAGCAAAGCTGGTTGGTGGCAAAAAGAACACTAAGTCCTCTGTTAGGCGAAGGTTACTGGCTGATTTGTCACGGGAACTTGGTGCAGAGGAAGACAGTGAAAAATGTGGGAATGATGAAATCGTAAATAACAAGGACGATCTTTCAGTAGAAGGGGAGGTGGATGGACAAGATGGCTGCGAGAAGTACTTAGAAAATGCTGAAGACAAGAGGTGTGGAAGTGGAATTGCTGGCAGTGAAGAAAACTCTTCAATATTCTCAGACCCAACAAGTTCCTTCAGTGGAGCAAATGATAATGAACCTGACTTAAATGACTCAAACAGAAGCAGTGTTGCTTCAAATTTGTCTTTGGATGAAAATGATGATCAGTCCCAGTCTATAGTGGAAGGTTCGTCCCTTCCAGTTCCTGATCAGCTTGAGAACATCCCTGAAAAATCCGGATGCACGAACGATTGTGAGGGCAATCCAGCAGTAGGGGCAAAGGAGAGGAAACTTCTTGGAAAATTTCCATGGTTTTGGAAGTTTGGTAGAAATGCTGCTAGTGAGGGGAAAGGTGACACTGAGGCTTCCAAATTGGCTGGAGCTGAGAATAATCCGATAAAGCATATTGCTCCCCCTAGAATTGATGGGGCATGTAGTACTTCTATTAGCGGTAAAGGAGACGGTGTCGATCAGAACGTGATGGGGACTCTCAAGAATATTGGTCAGTCTATGCTCGATCATATACAGGTTATTGAGACCGTATTTCAGCAAGAACGGGGTCAAGTAGGATCGTTGGAGAATTTGTCTAAAAATCATTTAGTCGGCAAAGGACAAGTAACGGCCATGGCAGCTCTCAAGGAGCTTCGGAAAATCAGCAATCTCTTATCTGAGATGTAA 2508 43.06 MAPSEIVPALSEPTSTTSSSSCSGSVFHRISEDKRQFVDLRGVRWRINLGVLPSSSLASIDDLRRVTADSRRRYAILRRRHLVDPHVSKDGSSSPDIAMDNPLSQNPDSMWGRFFRSAELEKMVDQDLSRLYPEHGSYFQTPGCQSLLRRILLLWCLQHPQFGYRQGMHELLAPLLYVLHVDVERLSQVRKLYEDQFADKFDGLSFQDGSFKYNFDFKNRLDSTEDEFGADGNVESVKSLSELDPEIQTIILLTDAYGAEGELGIVLSDRFIEHDAYTMFDALMSGAHGEVAMADFYSPTPAGGSLSGLPPVIEASSALYHLLSHVDSSLHAHLVELGVEPQYFSLRWLRVLFGREFSLEDLLTIWDEIFASDNTKFDRSDEPETSSSFGFLSSSRGAFIAAIAVSMLLYLRSSLLATENATLCLQRLLNFPKNVDLKKLIEKAKSLQTLAMHSNISSSPLLSGAYHHHSKSIVGRGNGLSSGSVSPKTPLNHVPESYWEEKWRVLHKEQEFKQSGSKSKNAAQKKGWSEKVRFLYRTESDPFPAKLVGGKKNTKSSVRRRLLADLSRELGAEEDSEKCGNDEIVNNKDDLSVEGEVDGQDGCEKYLENAEDKRCGSGIAGSEENSSIFSDPTSSFSGANDNEPDLNDSNRSSVASNLSLDENDDQSQSIVEGSSLPVPDQLENIPEKSGCTNDCEGNPAVGAKERKLLGKFPWFWKFGRNAASEGKGDTEASKLAGAENNPIKHIAPPRIDGACSTSISGKGDGVDQNVMGTLKNIGQSMLDHIQVIETVFQQERGQVGSLENLSKNHLVGKGQVTAMAALKELRKISNLLSEM 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21209588 21215549 + MELO3C003977.2.1 Cme05g01290 328353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01290 835 ProSiteProfiles TBC/rab GAP domain profile. 35 373 IPR000195 -
Cme05g01290 835 MobiDBLite consensus disorder prediction 1 25 - -
Cme05g01290 835 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 109 291 - -
Cme05g01290 835 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 308 448 IPR035969 -
Cme05g01290 835 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 725 - -
Cme05g01290 835 Gene3D - 312 457 - -
Cme05g01290 835 MobiDBLite consensus disorder prediction 620 675 - -
Cme05g01290 835 MobiDBLite consensus disorder prediction 569 597 - -
Cme05g01290 835 Pfam Rab-GTPase-TBC domain 121 179 IPR000195 -
Cme05g01290 835 Pfam Rab-GTPase-TBC domain 273 373 IPR000195 -
Cme05g01290 835 MobiDBLite consensus disorder prediction 9 25 - -
Cme05g01290 835 MobiDBLite consensus disorder prediction 615 693 - -
Cme05g01290 835 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 725 - -
Cme05g01290 835 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 333 IPR035969 -
Cme05g01290 835 SMART tbc_4 32 419 IPR000195 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01042 Cme05g01290 CCT
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01290 K18469 - csv:101219111 1595.1