Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01332 ATGAGTGAAGAGGCAACGGAGAAGACGATCAATAAGAAAGTAACAAGAGAAAACAAAAAATTCGAAAGAAGCCATTTTGATGTGTTGGGAATCTGCTGTTCTTCAGAAATCCCTTTGATCGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCACTGTCATTGTCCCTACAAGAACTCTCATTGTTGTTCATGATTCCCTCCTCATTTCTCAACTTCAAATTGTGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAATATACAATTAAAAGGAAAGGGAATTATGAAGAAGAAATGGCCAAGTCCTTATGCAATAGCCAGTGGGTTGCTTCTAACTGCGTCGTTTTTGAAGTATGTCTACCACCCATTGCGGTGGCTTGCCGTTGCCGCCGTCGCCGCTGGCATCTTTCCCATTCTTCTAAAAGCCATTTCAGCCATTCGCCACCTCAGAATTGATGTCAACATTCTTGCTATTATTGCTGTTGTGGGGACAATTGCAATGGAGGATTATATGGAAGCTGGGAGTATAGTGTTTTTGTTTTCCATTGCGGAATGGCTTGAGTCAAGAGCAAGTCAAAAGGCGAATGGTGCAATGAGTTCACTAATGAGGTTAGCTCCCCAAAAAGCCACAATAGCTGAAAGTGGAGAGGTTGTGGATGTAAGAGATGTGAAATTGAAGAGTGTGTTAAGTGTGAAAGCTGGAGAAGTTATTCCCATTGATGGGATTGTCGTTGAAGGCAATTGTGAAGTTGATGAGAAAACTTTGAGTGGAGAAACTTTCCCTGTTACCAAACAAAAAGATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTATGTAAGTGTTCAAACAACAGTTGTTGCTGAGGATTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCAAAAAAACAAATCAAAAACCCAAACATTCATCGATGAATGTGCCAAATATTACACCCCAGCTGTTATTATCATCTCGGCTTGTCTAGCAGCCATTCCAGCTGCATTGAGAGTTCATAATCTCAGCCATTGGCTTCACTTAGCTTTGGTGGTTTTAGTGAGTGCATGTCCTTGTGCCCTAATCCTCTCCACCCCGGTCGCCGCCTTTTGTGCTCTTACAAAGGCAGCCATGGCCGGAGTTTTAATCAAAGGCGGCAACCACCTTGAAGTTCTTGCAAAGATTAAGGTTATGGCCTTTGATAAAACTGGCACAATCACTAGAGGTGAATTTGTTGTAACACATTTTCAAGCTCTAAGAGATGATATTAGCTTCAACACCTTGCTCCAATGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAACTGCTCTTGTCAACTATGGAAAGCTGCATTCTATCGATCTTAAGCCAGAAAACGTAGAGGAATTTGAAAATTTTCCAGGAGAAGGTGTTCGTGGGAAGATAGATGGTAATGATATTTACATTGGAAGCAAAAAAATTGCTGCCAGAGCTGGCTACGACATACCAGTTTCTTCAGAATTGAACAACTTTGACGACGAAACTAGACAAGAGCAAACCCTTGGATATGTATTTTGTGGGGGGACGATAATTGGATCCTTCGGTCTATTGGATTCGTGTCGTTCGGGGGTTAAAGAGGCAATCGAGGAGATCAAAAGTTTTGGAATTAAAACTGCTATGCTCACAGGAGATTGTAGGGCTGCTGCCATGCATGTCCAAGAACAGCTTGGGAATAATTTCGAAGTAATCCATTCAGAACTTCTACCAAAGGAGAAGGCAAATATCATAAAAGAATTTAAAAAGAATGATGGAGCAATTGCCATGGTTGGAGACGGCTTAAATGATACCCCAGCATTAGCTACCGCTGATATTGGCATGTCAATGGGTATTTCAGGTTCAGCATTGGCCACTGAAACTGGGAATGTGATTTTAATGTCAAATGACATGAGAAAGATTCCAAAAGTCATCAAACTAGCAAAGACATTCCACACAAAAGTAGTTCAAAATGTCATTTTGTCAATCGGTACGAAGACTGCCATCCTAGGCTTGGCATTTGCTGGACATCCCCTCATTTGGGCAGCCGTTCTTGCTGATGTCGGTACTTGTCTATTGGTCATCTTGAACAGCATGCTCCTTTTGAGAGGAACGGATCACAAACATGGGAAGAAAAAATGTTGCAAATCTTCCAAACCATGCTTAACGAAACATGGACAACTGTGCGATGGTACTCGATCTTCTCATCATCATGATCATCATGATCACCATAATCATCGATGCCATGTCGTTGATGATCAATCAACTAGTCGAGTGAATAATCATGTCCATAAGCATTGTTGTTATGAGGAAAAGGATCACAAGATTCAACTTTCTCAAGATCACAATAGAAAAACTTGTGGAGTACTGCATCAAGAGAAGAATCATAAATGTGGAGATCATGAGTGTAAGGAAACTAATGTGCATCACAAAAAAGAACATAAATTTCATCACAACTATTCAAATGATTGTGAGAAAACCCCACTTGAGAAAGAGATTACGGGAAATTCTTCAAAGCGAGTGGGCAAATCAGATTGTAATTGCCGCTCACATCATGTTGCTATTGACATTCATGAAAGTAATGAGTGTGAGAGAGTAGTGCATAAATAG 2646 40.85 MSEEATEKTINKKVTRENKKFERSHFDVLGICCSSEIPLIENILKPLEGIKQITVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANIQLKGKGIMKKKWPSPYAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAIRHLRIDVNILAIIAVVGTIAMEDYMEAGSIVFLFSIAEWLESRASQKANGAMSSLMRLAPQKATIAESGEVVDVRDVKLKSVLSVKAGEVIPIDGIVVEGNCEVDEKTLSGETFPVTKQKDSLVWAGTINLNGYVSVQTTVVAEDCVVAKMAELVEEAQKNKSKTQTFIDECAKYYTPAVIIISACLAAIPAALRVHNLSHWLHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGGNHLEVLAKIKVMAFDKTGTITRGEFVVTHFQALRDDISFNTLLQWVSSIESKSSHPMATALVNYGKLHSIDLKPENVEEFENFPGEGVRGKIDGNDIYIGSKKIAARAGYDIPVSSELNNFDDETRQEQTLGYVFCGGTIIGSFGLLDSCRSGVKEAIEEIKSFGIKTAMLTGDCRAAAMHVQEQLGNNFEVIHSELLPKEKANIIKEFKKNDGAIAMVGDGLNDTPALATADIGMSMGISGSALATETGNVILMSNDMRKIPKVIKLAKTFHTKVVQNVILSIGTKTAILGLAFAGHPLIWAAVLADVGTCLLVILNSMLLLRGTDHKHGKKKCCKSSKPCLTKHGQLCDGTRSSHHHDHHDHHNHRCHVVDDQSTSRVNNHVHKHCCYEEKDHKIQLSQDHNRKTCGVLHQEKNHKCGDHECKETNVHHKKEHKFHHNYSNDCEKTPLEKEITGNSSKRVGKSDCNCRSHHVAIDIHESNECERVVHK 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22206927 22213747 - MELO3C003996.2.1 Cme05g01332 328395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01332 881 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 155 713 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cme05g01332 881 SUPERFAMILY HAD-like 403 711 IPR036412 -
Cme05g01332 881 SUPERFAMILY Calcium ATPase, transduction domain A 218 303 IPR008250 -
Cme05g01332 881 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 178 687 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01332 881 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 15 734 - -
Cme05g01332 881 SUPERFAMILY HMA, heavy metal-associated domain 20 87 IPR036163 GO:0046872
Cme05g01332 881 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 15 734 - -
Cme05g01332 881 Pfam E1-E2 ATPase 207 382 - -
Cme05g01332 881 SFLD p-type atpase 386 661 IPR044492 -
Cme05g01332 881 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 155 499 - -
Cme05g01332 881 Pfam haloacid dehalogenase-like hydrolase 400 624 - -
Cme05g01332 881 PRINTS P-type cation-transporting ATPase superfamily signature 253 267 - -
Cme05g01332 881 PRINTS P-type cation-transporting ATPase superfamily signature 404 418 - -
Cme05g01332 881 PRINTS P-type cation-transporting ATPase superfamily signature 533 544 - -
Cme05g01332 881 PRINTS P-type cation-transporting ATPase superfamily signature 555 565 - -
Cme05g01332 881 PRINTS P-type cation-transporting ATPase superfamily signature 610 629 - -
Cme05g01332 881 PRINTS P-type cation-transporting ATPase superfamily signature 634 646 - -
Cme05g01332 881 ProSitePatterns E1-E2 ATPases phosphorylation site. 406 412 IPR018303 -
Cme05g01332 881 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 398 IPR023298 -
Cme05g01332 881 Gene3D - 18 90 - -
Cme05g01332 881 CDD P-type_ATPase_HM 106 712 - -
Cme05g01332 881 ProSiteProfiles Heavy-metal-associated domain profile. 23 89 IPR006121 GO:0046872
Cme05g01332 881 Gene3D - 396 661 IPR023214 -
Cme05g01332 881 SFLD C1.7: P-type atpase like 386 661 - -
Cme05g01332 881 Gene3D - 415 541 IPR023299 GO:0000166
Cme05g01332 881 Gene3D - 193 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01601 Cme-Chr2:23199905 Cme05g01332 Cme-Chr5:22206927 2.40E-23 dispersed
Cme02g01602 Cme-Chr2:23202305 Cme05g01332 Cme-Chr5:22206927 0 dispersed
Cme05g01332 Cme-Chr5:22206927 Cme09g01752 Cme-Chr9:22014667 2.82E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01332 K01534 - csv:101203668 1590.47