Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01344 ATGTGGAATCCTCTGTCTTGGGTCATGGAAGCTGCAGCTATCATGGCCATTGCCTTGGCCAATGGTGGCGGTCGGGGACCGGATTGGCAGGATTTCGTCGGTATCGTCTGTCTTTTGGTTATCAACTCCACCATTAGTTTCATTGAAGAGAACAATGCTGGTAATGCAGCTGCTGCTCTTATGGCTGGTCTTGCACCTAAAACCAAGGTTCTGAGGGATGGAAAATGGTGTGAACAAGATGCATCAATTCTAGTACCAGGAGATGTGATCAGTGTGAAATTGGGAGATATCATCCCAGCAGATGCTCGTCTTCTCGAGGGTGATCCGTTAAAGGTTGATCAATCTGCCTTGACCGGAGAATCACTTCCCGTGACCAAGAACCCAGGGGATGAAGTTTTCTCTGGCTCCACTTGCAAACAAGGAGAAATCGAGGCTGTTGTTATTGCTACTGGTGTCCACACTTTCTTTGGTAAAGCAGCTCATCTTGTTGATAGTACTAATCAAGTTGGACACTTCCAAAAGGTTCTCACTGCCATTGGAAACTTTTGTATTTGCTCCATTGCCATTGGTATGTTGATTGAGATCCTCGTTATGTACCCGATCCAACACCGTGAATATAGAGATGGTATCGACAACCTTTTGGTTCTCTTGATTGGAGGCATTCCAATTGCTATGCCTACTGTCTTGTCAGTGACCATGGCTATTGGTTCTCACAAGCTGTCTCAACAAGGTGCTATCACCAAGAGAATGACAGCTATTGAAGAAATGGCCGGTATGGATGTACTTTGCAGTGACAAAACTGGAACGCTGACTCTTAACAAGTTGAGTGTTGACAAGAACTTGATTGAGGTGTTTGTCAAGGGTGTTGACAAAGAGCATGTCATTCTGCTTGCTGCAAGGGCATCTAGGACTGAAAACCAGGATGCAATTGATGCTGCCATGGTTGGAATGCTCGCTGACCCAAAAGAGGCAAGAGCTGGAATTAGAGAAATTCACTTCTTCCCATTTAATCCTGTGGATAAGAGAACTGCTTTGACTTACATTGATTCTAATGGAAACTGGCACCGTGCTAGCAAAGGTGCTCCTGAACAGATCTTGACTCTTTGCAACTGCAAAGAGGACTTCAAGAGGAAGGTGTTTTCTGTAATTGACAAGTTTGCCGAGCGTGGACTTCGATCTTTGGCTGTTGCAAGACAGGAAGTGCCTGAGAAGACCAAGGAAAGTCCCGGTGCTCCATGGCAATTTGTTGGTTTGTTGCCCCTTTTTGATCCTCCTAGACACGATAGTGCTGAAACCATCCGCAGGGCTCTCAACTTGGGTGTGAATGTCAAGATGATTACTGGTGATCAACTTGCTATAGCAAAGGAAACCGGTCGAAGACTTGGAATGGGAACGAACATGTATCCATCTTCTTCCTTACTCGGCCAGCACAAGGACGAAAGCATTGCTGGCCTTCCAGTTGAAGAGTTGATTGAGAAGGCTGATGGATTCGCTGGAGTATTTCCAGAACACAAATACGAAATTGTAAAGAAGTTGCAAGAAAGAAAGCACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCTTTGAAGAAGGCAGATATTGGTATTGCTGTTGCTGATGCCACTGACGCTGCACGAGGTGCATCCGACATTGTTCTTACCGAGCCTGGTTTGAGTGTTATCATTAGTGCCGTGTTGACCAGCAGAGCTATCTTCCAAAGGATGAAGAACTATACTATTTATGCAGTCTCCATCACTATCCGTATTGTGGTATGTGTGCAGTCAATGGTTAAACTTGATTTGTTCATTGCAATGTTTGGTTTCATGTTGATTGCTCTCATTTGGAGATTTGATTTCTCTCCCTTCATGGTTTTGATTATTGCCATCTTGAATGATGGTACAATTATGACAATCTCAAAGGACAGGGTGAAGCCATCTCCATTACCTGACAGTTGGAAACTAAAGGAGATTTTCGCAACCGGAATAGTACTTGGTGGGTACTTGGCTTTGATGACGGATAAATTCGGTGTTAGATCCATCCGTCATAATGTAGATGAGATGATGGCTGCTTTGTACCTGCAAGTCAGTATTGTCAGCCAGGCTTTGATTTTTGTTACTAGATCGCGTGGCTGGTCGTATGCTGAGCGACCTGGACTTCTGTTGGTCGGTGCTTTCTTGATTGCACAGCTGGTTGCAACCTTGATCGCAGTATATGCGAACTGGGGATTTGCAAAGATCAAGGGAATCGGATGGGGATGGGCCGGTGTCATCTGGCTTTACAGCATTGTTTTCTATATTCCACTCGATATCATGAAGTTTGCTATTCGTTACATATTGAGCGGAAAGGCATGGCTCAACTTGTTAGAAAACAAGACTGCTTTCACCACCAAGAAAGACTACGGAAAAGAGGAAAGAGAAGCACAATGGGCCCTTGCTCAAAGAACATTACATGGACTTCAACCACCCGAGTCAACAAACATCTTCTCCGAAAAGAGCAGCTACAGAGAACTCTCTGAGATTGCCGAGCAAGCTAAGAGACGTGCCGAGATTGCAAGGCTCCGGGAGCTGAACACACTCAAGGGACACGTCGAGTCCGTGGTGAAGTTGAAGGGACTCGACATTGACACCATTCAGCAGCACTACACAGTGTGA 2661 45.28 MWNPLSWVMEAAAIMAIALANGGGRGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQDASILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEILVMYPIQHREYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKEHVILLAARASRTENQDAIDAAMVGMLADPKEARAGIREIHFFPFNPVDKRTALTYIDSNGNWHRASKGAPEQILTLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESPGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVVCVQSMVKLDLFIAMFGFMLIALIWRFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGGYLALMTDKFGVRSIRHNVDEMMAALYLQVSIVSQALIFVTRSRGWSYAERPGLLLVGAFLIAQLVATLIAVYANWGFAKIKGIGWGWAGVIWLYSIVFYIPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22344900 22349401 - MELO3C004004.2.1 Cme05g01344 328407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01344 886 Gene3D - 835 886 - -
Cme05g01344 886 Gene3D - 28 750 - -
Cme05g01344 886 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01344 886 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01344 886 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01344 886 PRINTS H+-transporting ATPase (proton pump) signature 695 716 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01344 886 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01344 886 PANTHER CALCIUM-TRANSPORTING ATPASE 1 866 - -
Cme05g01344 886 SUPERFAMILY HAD-like 259 569 IPR036412 -
Cme05g01344 886 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 1 741 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme05g01344 886 SFLD p-type atpase 245 573 IPR044492 -
Cme05g01344 886 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 782 IPR023298 -
Cme05g01344 886 SFLD C1.7: P-type atpase like 245 573 - -
Cme05g01344 886 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
Cme05g01344 886 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Cme05g01344 886 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Cme05g01344 886 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Cme05g01344 886 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Cme05g01344 886 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Cme05g01344 886 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Cme05g01344 886 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Cme05g01344 886 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Cme05g01344 886 Pfam E1-E2 ATPase 65 242 - -
Cme05g01344 886 Gene3D - 275 422 IPR023299 GO:0000166
Cme05g01344 886 PANTHER PLASMA MEMBRANE ATPASE 1 866 - -
Cme05g01344 886 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 497 613 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01344 886 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 35 282 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01344 886 Gene3D - 260 559 IPR023214 -
Cme05g01344 886 Gene3D - 66 150 - -
Cme05g01344 886 CDD P-type_ATPase_H 1 776 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme05g01344 886 Coils Coil 837 857 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01344 Cme-Chr5:22344900 Cme05g01855 Cme-Chr5:27319766 0 dispersed
Cme02g01583 Cme-Chr2:22885271 Cme05g01344 Cme-Chr5:22344900 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01344 K01535 - csv:101221564 1641.71