Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01358 ATGATGGGATCTTTGATGGTGGCGGAATACAATGTGTCCTTTATTGGTGCTATCGACTTGCCAAGAAGTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTACATGAAATTTCAAAGTCAAACGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGATATTCTACAGGTCCTTTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATTGAGCATCTTTTGAGACTCGTATCCGAAAAGAAGTCATCCGTGTCTGAGGTTTTGAAAAATCTTGAGCCACAGTCTCCTTCAGGTGGTCATAAAACTACCAAAAGGCAGAGGAAATCTGAGCATGTAGCTCAACTTTCTGTTCCTGCAACTGACTTTCCAACCAGCAGTTCTCATAATGATTTGGTTCGTACGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTAAATCCAGGAGATGCATTTTGTAGAAGGTGTTCATGCTGCATCTGTCGTCAGTATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCAGAGCCTCCTTTTCAAGGCGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTGAAAGATGCAAGATCAGGAATTTCGAAAGCTGGACGAAGCAAGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAAGTAAATGATTTGCTTGGGTGCTGTAGAAAACAACTTGTTCATGCAAAAGATACAAGAAAGGTCGACATACTGTGCTATCGTGTCTCTCTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGGTTTATCAGATTGTTGGTGAGTCTGTGAGGAAGCTTGAAGAGGAAGTGGGACCAATAGCCGGTGTACCAGTAAAGATGGGTAGAGGTATTGTAAACAGGCTTTCGTCTGGCCCTGAAGTTCAAGAACTCTGTGCTTCTGCTATTGAGTTATTGGACTCGATGGTCTCCAGCCAATCCTTGCATCTTTCACCTAATCCTGACGTTCAAGATGCAAATTTTGTTCCTGCAAACATGATTAGATTTGAAGATGTTCAGTCAACATCCCTCACTCTAGTTTTGAGTTATGAAAATGGATCCTCTGAGAACCAGATCGGGTTCACCTTATGGCATCGTAGGGCAGATGATGCAGATTACCCGGCAGAACCAACATGTATTCTACGACAACCAAAGGCGAGGTGTGTTGTGATGGGACTATCACCTGCTACTAAATATTATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGAGAATTTGAAGTTCAGTTCTCAACGATTGGGGAGGTAGAAGAGAACCCAGGCTGTTTAGAAATTGAGAGAAGCCAAAGTCATGCAACTAACTGTAGCGACCTTTCTAATCCTTCTTCAGTTGAAGACGAAACTACTGACATTCTTCCCTATGGTGATCAGACCAATAACCTAGGAAAAAACTCCCCTGCCTATTTAAAGGGCATCGAAATACTTTCCTCAGCTATATTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACGCCTGCAGGAACAGTTTCTGTTCTGAATGAAGCAACTGCTGCAGGATTGGTTGGTTTGATTCCCAACTCTGCTGGATCTAAGCTCGAGAACAGGCATGGACCAGCTGCCCCAAAACTCAACATCGATAATCAGTTAAGCACCCTTGTTCGGTCTGGAATGGAGGGCCAACAGTTTGTTGGCTGTTCTGAAGATGGTTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGGGGTGAAAGACCGAAATCCAGCTGCAAGGACCAGGAAAACAGAACTCGAAAAGTAGGGGAGCCCCATGATGGTGGTACGTCAAAGATGAGAACCGGGGAAAGACAGGATGACAAATGTGCTGAAAACGGTGTTTCAGATCGGGAATTCGAGCATTATGTGAAGGTAATTAGATGGTTGGAGTGCAAGGGTTATATCGAAAAGAATTTCAGACAGAAATTTCTCACTTGGTACAGCTTGAGAGCATCTCAACAAGAAGTTAAGATTGTGAAGGTGTTTGTTGATACCTTTATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACATTTTCAGAATGCATTTCAAGCAAAAAACCGACTACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2220 43.42 MMGSLMVAEYNVSFIGAIDLPRSSKLTMQEKRELVHEISKSNGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSEKKSSVSEVLKNLEPQSPSGGHKTTKRQRKSEHVAQLSVPATDFPTSSSHNDLVRTACCKNLACRATLNPGDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDARSGISKAGRSKGIDGSFYCVSCGKVNDLLGCCRKQLVHAKDTRKVDILCYRVSLSQKLLHGTEKYKVVYQIVGESVRKLEEEVGPIAGVPVKMGRGIVNRLSSGPEVQELCASAIELLDSMVSSQSLHLSPNPDVQDANFVPANMIRFEDVQSTSLTLVLSYENGSSENQIGFTLWHRRADDADYPAEPTCILRQPKARCVVMGLSPATKYYFKIVQFEGTRELREFEVQFSTIGEVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDQTNNLGKNSPAYLKGIEILSSAILSTDAFNLSDNGEEGTPAGTVSVLNEATAAGLVGLIPNSAGSKLENRHGPAAPKLNIDNQLSTLVRSGMEGQQFVGCSEDGLPITPCKLEVLKDSLGRGERPKSSCKDQENRTRKVGEPHDGGTSKMRTGERQDDKCAENGVSDREFEHYVKVIRWLECKGYIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTPPGFCMKLWH 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22613711 22618281 - MELO3C004019.2.1 Cme05g01358 328421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01358 739 PANTHER VIN3-LIKE PROTEIN 2-RELATED 19 739 - -
Cme05g01358 739 Pfam PHD - plant homeodomain finger protein 146 265 IPR032881 -
Cme05g01358 739 MobiDBLite consensus disorder prediction 605 647 - -
Cme05g01358 739 PANTHER VIN3-LIKE PROTEIN 2-RELATED 19 739 IPR044514 GO:0010048|GO:0040029
Cme05g01358 739 MobiDBLite consensus disorder prediction 97 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01358 - - - csv:101222501 1383.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01813 Cme-Chr3:26503990 Cme05g01358 Cme-Chr5:22613711 1.35E-15 dispersed
Cme05g01358 Cme-Chr5:22613711 Cme05g01963 Cme-Chr5:28182254 6.86E-11 dispersed
Cme02g01578 Cme-Chr2:22841833 Cme05g01358 Cme-Chr5:22613711 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g01578 . 4 464 PHD Gene Family AT4G30200 52.1 2.7e-129 459.5
Cme05g01358 . 22 496 PHD Gene Family AT4G30200 50.1 2.7e-121 433.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme05g01358 Cme_Chr05 FPKM 0.738482 0.598224 2.08892 3.007526 8.153492 7.356062 10.242494 0.0 0.0 0.0