Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01358 ATGATGGGATCTTTGATGGTGGCGGAATACAATGTGTCCTTTATTGGTGCTATCGACTTGCCAAGAAGTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTACATGAAATTTCAAAGTCAAACGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGATATTCTACAGGTCCTTTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATTGAGCATCTTTTGAGACTCGTATCCGAAAAGAAGTCATCCGTGTCTGAGGTTTTGAAAAATCTTGAGCCACAGTCTCCTTCAGGTGGTCATAAAACTACCAAAAGGCAGAGGAAATCTGAGCATGTAGCTCAACTTTCTGTTCCTGCAACTGACTTTCCAACCAGCAGTTCTCATAATGATTTGGTTCGTACGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTAAATCCAGGAGATGCATTTTGTAGAAGGTGTTCATGCTGCATCTGTCGTCAGTATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCAGAGCCTCCTTTTCAAGGCGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTGAAAGATGCAAGATCAGGAATTTCGAAAGCTGGACGAAGCAAGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAAGTAAATGATTTGCTTGGGTGCTGTAGAAAACAACTTGTTCATGCAAAAGATACAAGAAAGGTCGACATACTGTGCTATCGTGTCTCTCTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGGTTTATCAGATTGTTGGTGAGTCTGTGAGGAAGCTTGAAGAGGAAGTGGGACCAATAGCCGGTGTACCAGTAAAGATGGGTAGAGGTATTGTAAACAGGCTTTCGTCTGGCCCTGAAGTTCAAGAACTCTGTGCTTCTGCTATTGAGTTATTGGACTCGATGGTCTCCAGCCAATCCTTGCATCTTTCACCTAATCCTGACGTTCAAGATGCAAATTTTGTTCCTGCAAACATGATTAGATTTGAAGATGTTCAGTCAACATCCCTCACTCTAGTTTTGAGTTATGAAAATGGATCCTCTGAGAACCAGATCGGGTTCACCTTATGGCATCGTAGGGCAGATGATGCAGATTACCCGGCAGAACCAACATGTATTCTACGACAACCAAAGGCGAGGTGTGTTGTGATGGGACTATCACCTGCTACTAAATATTATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGAGAATTTGAAGTTCAGTTCTCAACGATTGGGGAGGTAGAAGAGAACCCAGGCTGTTTAGAAATTGAGAGAAGCCAAAGTCATGCAACTAACTGTAGCGACCTTTCTAATCCTTCTTCAGTTGAAGACGAAACTACTGACATTCTTCCCTATGGTGATCAGACCAATAACCTAGGAAAAAACTCCCCTGCCTATTTAAAGGGCATCGAAATACTTTCCTCAGCTATATTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACGCCTGCAGGAACAGTTTCTGTTCTGAATGAAGCAACTGCTGCAGGATTGGTTGGTTTGATTCCCAACTCTGCTGGATCTAAGCTCGAGAACAGGCATGGACCAGCTGCCCCAAAACTCAACATCGATAATCAGTTAAGCACCCTTGTTCGGTCTGGAATGGAGGGCCAACAGTTTGTTGGCTGTTCTGAAGATGGTTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGGGGTGAAAGACCGAAATCCAGCTGCAAGGACCAGGAAAACAGAACTCGAAAAGTAGGGGAGCCCCATGATGGTGGTACGTCAAAGATGAGAACCGGGGAAAGACAGGATGACAAATGTGCTGAAAACGGTGTTTCAGATCGGGAATTCGAGCATTATGTGAAGGTAATTAGATGGTTGGAGTGCAAGGGTTATATCGAAAAGAATTTCAGACAGAAATTTCTCACTTGGTACAGCTTGAGAGCATCTCAACAAGAAGTTAAGATTGTGAAGGTGTTTGTTGATACCTTTATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACATTTTCAGAATGCATTTCAAGCAAAAAACCGACTACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2220 43.42 MMGSLMVAEYNVSFIGAIDLPRSSKLTMQEKRELVHEISKSNGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSEKKSSVSEVLKNLEPQSPSGGHKTTKRQRKSEHVAQLSVPATDFPTSSSHNDLVRTACCKNLACRATLNPGDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDARSGISKAGRSKGIDGSFYCVSCGKVNDLLGCCRKQLVHAKDTRKVDILCYRVSLSQKLLHGTEKYKVVYQIVGESVRKLEEEVGPIAGVPVKMGRGIVNRLSSGPEVQELCASAIELLDSMVSSQSLHLSPNPDVQDANFVPANMIRFEDVQSTSLTLVLSYENGSSENQIGFTLWHRRADDADYPAEPTCILRQPKARCVVMGLSPATKYYFKIVQFEGTRELREFEVQFSTIGEVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDQTNNLGKNSPAYLKGIEILSSAILSTDAFNLSDNGEEGTPAGTVSVLNEATAAGLVGLIPNSAGSKLENRHGPAAPKLNIDNQLSTLVRSGMEGQQFVGCSEDGLPITPCKLEVLKDSLGRGERPKSSCKDQENRTRKVGEPHDGGTSKMRTGERQDDKCAENGVSDREFEHYVKVIRWLECKGYIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTPPGFCMKLWH 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22613711 22618281 - MELO3C004019.2.1 Cme05g01358 328421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01358 739 PANTHER VIN3-LIKE PROTEIN 2-RELATED 19 739 - -
Cme05g01358 739 Pfam PHD - plant homeodomain finger protein 146 265 IPR032881 -
Cme05g01358 739 MobiDBLite consensus disorder prediction 605 647 - -
Cme05g01358 739 PANTHER VIN3-LIKE PROTEIN 2-RELATED 19 739 IPR044514 GO:0010048|GO:0040029
Cme05g01358 739 MobiDBLite consensus disorder prediction 97 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01813 Cme-Chr3:26503990 Cme05g01358 Cme-Chr5:22613711 1.35E-15 dispersed
Cme05g01358 Cme-Chr5:22613711 Cme05g01963 Cme-Chr5:28182254 6.86E-11 dispersed
Cme02g01578 Cme-Chr2:22841833 Cme05g01358 Cme-Chr5:22613711 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01358 - - csv:101222501 1383.62