Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01392 ATGCACTCCTTCGCCGCCGCCTGGTCCGGCGTTCCCGCCGCTACCAAACCCCTTTGCTATTCCTGCAAGTCCGCCACCGCTGTTCTCTTCTGCCGACACGACACTGCCTTCCTCTGTCTCCGCTGTGATGCTCAAATCCACACCCTCTCCGGCACCCGACACCCACGTGTCTGGCTTTGCGAGGTCTGTGAGCAAGCTCCGGCCACCATCACCTGCAACGCCGACGCCGCTGCTCTCTGCACTTCCTGCGATGCTGACATCCACTCTGTTAATCCCCTCGCTCGTCGCCATGACCGCTCTGCTATTCAACCCTTCTACGATTCGCCTCCGTCTTCCTCTGTCGCTTCTGTCTTTAAGTTCCTTATTCCGACTCAACACCAACACGACGCTGTTCAACCTGATTTGAAATCAGAGGACATTTTCTTCTCCGATATGGATTCGTTGATTGATTTCGATTACCCGACTGCTGGTGATGGTGTTGTTCCTGAACAATCCAATCCAGGAACGGAGTCCACTACGCCACCCACTGATTACTCTACTAGAAATTTATCCGGGTTCCAGCTCTGTAGTACTCGATCTAAACCTGATGCCATGAGCTACCCATCTCAGAATCTTAGCCATAGTGTTTCTTCATCTTCTTTAGACGTGGGAGTTGTGCCGGATCGGAACACGGCCTCCGACGCGTCGTTTCCGATGGGGCAGCTGGCGGAGAAGGCGGTTCAATTGCGGGGGATGGACCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACGATTCGTTATGCTTCGAGGAAAGCTTATGCTGAAATTCGGCCGAGGGTTAAAGGGAGGTTCGTTAAACGGAGTGAAACGAACTGTGAAATAGAGAGATTCTACGGCAGCGCCGGCGTGGGGTTCATGGTAGGGGATGGGCAATACGGCGTTGTTCCGAGCCTTAGAGTTTGA 969 53.35 MHSFAAAWSGVPAATKPLCYSCKSATAVLFCRHDTAFLCLRCDAQIHTLSGTRHPRVWLCEVCEQAPATITCNADAAALCTSCDADIHSVNPLARRHDRSAIQPFYDSPPSSSVASVFKFLIPTQHQHDAVQPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPEQSNPGTESTTPPTDYSTRNLSGFQLCSTRSKPDAMSYPSQNLSHSVSSSSLDVGVVPDRNTASDASFPMGQLAEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSETNCEIERFYGSAGVGFMVGDGQYGVVPSLRV 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23182545 23184228 - MELO3C004050.2.1 Cme05g01392 328455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01392 322 Pfam B-box zinc finger 57 100 IPR000315 GO:0008270
Cme05g01392 322 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Cme05g01392 322 SMART bboxneu5 55 102 IPR000315 GO:0008270
Cme05g01392 322 SMART bboxneu5 14 49 IPR000315 GO:0008270
Cme05g01392 322 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 319 IPR045281 GO:0009909
Cme05g01392 322 Pfam CCT motif 247 289 IPR010402 GO:0005515
Cme05g01392 322 ProSiteProfiles CCT domain profile. 247 289 IPR010402 GO:0005515
Cme05g01392 322 CDD Bbox1_BBX-like 59 102 - -
Cme05g01392 322 CDD Bbox1_BBX-like 18 59 - -
Cme05g01392 322 ProSiteProfiles Zinc finger B-box type profile. 14 59 IPR000315 GO:0008270
Cme05g01392 322 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 14 319 - -
Cme05g01392 322 MobiDBLite consensus disorder prediction 162 181 - -
Cme05g01392 322 MobiDBLite consensus disorder prediction 155 181 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01520 Cme05g01392 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01557 Cme-Chr3:24667861 Cme05g01392 Cme-Chr5:23182545 9.78E-77 dispersed
Cme05g01392 Cme-Chr5:23182545 Cme07g01072 Cme-Chr7:13281716 5.04E-13 dispersed
Cme11g00764 Cme-Chr11:9529516 Cme05g01392 Cme-Chr5:23182545 1.80E-10 dispersed
Cme02g01520 Cme-Chr2:22258730 Cme05g01392 Cme-Chr5:23182545 1.43E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41363 PF00643 zf-B_box 2.80E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01392 - - csv:101217538 590.882