Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01423 ATGGATAGCCCTTTGACGCGGAGCTCTACTCCTAATTCCTCACCTATCTCAAATCCTGGTTCACATGATGAAAACCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACAAGGATTGTGAGTGTTCCAAGGGATATTACCTACGAGGAATTGATGATTAAGATGAGGGAACTATATGATGGGGCTGCAGTGTTGAAATACCAGCAACCAGATGAGGATCCTGATGCCCTTGTGTCAGTTGTCAACGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGCGATGGGTTCACTAGGCTCAGGATATTCTTGTTTTCGCATCCTGAACAAGATGCTTCTTTGCCCTTTGTGGATGGGGATGAAAGGGATACTGAGAGGCGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAACAAAATTCCCCTGCACTTAGTGGCATAGATGATATGCATGGGACTGAACATTTTTTGAATCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACCATACCACCTGCATCAGCTCACAATCCCTCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCTCAAAGGTATGGTGAAATGGAAGCTCCATGGAGTCCTGCTTTACTTTCACCTAGGCATCATGGTCCATATGATTCAAGACCAATGGGAGACTATCCATCTTCTCCATTTGCACGGTACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAACAAATGAATCACCAACATATGTATGAACATCAACCACAGTATAATGAGAATATTGTATGGCTGCCAAATGGAACAATTAGTGAAGAATCAGGTTTCCCAGGTAATATTTTACATGGACATGGTGTCCCAGATGGGAATAGTTCTTGTGAACACTGTCGAGCAAATTTTCATCGGTATCAAGCGCACATGGAGCAAGTTAATACGATAAATGGGCTTCCCCTTGAATATGCTCAGAATAGGGAGGCCTTGACGCAGAAGGCAGACACAAAGTTCCATCATGGTATTTTTCCAAACGAGCAGAATATTAATGATTACCGATCTGCTTATAATGAGACACCTCCCCATGACAAAGGATGGATTATGCAACACCAAATGAGTGTGCGAGGGGATGACACGAGGACACATGCTTCTGGGACTGGGCGATTAAACGATCACTACATTGTGGATGGTTCTGGCTCAAATTTGCCTCCTACACAAAGTAATATTGCTGATGGCTACCACGCTTCAACAAATTTTCATGATGAGGTATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCCGAAGATCGTGGTGTTGGTTATATGCCTTATGGGTATGGTGGAGATCCTCATTATCCTCCAATGTCACAAAGACATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTGCATGTTGCTCCCCCATATGAAGCATCTGTTTTCCATCAACAAGGGAATGCAAGCATAAATCCAGGATATATCAAAGCCATGCAAGATGGTAGTCCACGAATTCATATTGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAAAAAATTTTGGGTATTGATGGAGCAACTGGTACAGAGCATGTTCTGAAGACCAACTCAACCACAGTTGGCCATGACAATCAACAATTCACAAGTTTAGAACATATCCAACCACATCTTGATAAAATAAACCTTGTCGCTTCTCCTATGCAGAGGTCAGATTCATCTTCAGCATTTATTCAAGAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCACAACTAAGGGCTGTTAGTGCGGTTAATGAAGCTATGATGATGGAAAGGAAAGTTGTGCTTGGGGAAGGAAATGGACACATGATAAAGGATATGGGGAAAGCTGACATCTCTGAAGCACACACTGCATCTCATCCAGGGCAGAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCATTAAGTTCAGCTTGCACGAACTCTGCAGTAGAAAATGGTGATGGCTTGAAACCTTCTGTAGAGACTCTTGAAAAACCTAAACTATCTGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGAAAAGAGCAGCACTTGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCTAAGGAGACCTGATTCAATAGAGAAAAAAGAGACAACAAATGAGCGACACTCCTCGAATAACCACGTGGAACCTGAGTTGGAAACTGAGAGTGAAAATCAAAGCTCCAGAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTATCATGGGAAGTGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGAGAACGTTTGATTGCTGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTCGTTTCCTTCTACGGCATTGTCCGTGATGGTCCAGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCGTTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATTGATCGTCGGAAGAGGCTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAAAGGCCTGTTTGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGGCAACACACGTTAGTATCAGGAGGGGTTCGTGGAACTTTGCCTTGGATGGCGCCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACGGAGAAGATTGATGTTTACTCATTCGGAATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCAATAATCGGAGGAATTGTGCATAATTGTTTACGCCCTGAAATCCCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAAGTATGGTTATTATATGTGCTCTATAGAGACTGCATTGCTGGGAGACTACAAGTACATATATGAAGGAGATCCATGTAGTCATGGGAATGATTTCACTTGGGATACCGTTGGAAGCGTACGCCGTACGTTGGACATTGGCTCTCATGGCTGTGTTGGGTGGCTATGA 3435 43.0 MDSPLTRSSTPNSSPISNPGSHDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDASLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQQNSPALSGIDDMHGTEHFLNPMNIEGSLHTQRSCEPLSPYHLHQLTIPHVGSGGQQQSVAQRYGEMEAPWSPALLSPRHHGPYDSRPMGDYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTISEESGFPGNILHGHGVPDGNSSCEHCRANFHRYQAHMEQVNTINGLPLEYAQNREALTQKADTKFHHGIFPNEQNINDYRSAYNETPPHDKGWIMQHQMSVRGDDTRTHASGTGRLNDHYIVDGSGSNLPPTQSNIADGYHASTNFHDEVFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMSQRHMPGNASWRNVQNPLHVAPPYEASVFHQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQKILGIDGATGTEHVLKTNSTTVGHDNQQFTSLEHIQPHLDKINLVASPMQRSDSSSAFIQEKMVAPFHPSQNPQLRAVSAVNEAMMMERKVVLGEGNGHMIKDMGKADISEAHTASHPGQNNTDDTYSKVAPLESLSSACTNSAVENGDGLKPSVETLEKPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETALRRPDSIEKKETTNERHSSNNHVEPELETESENQSSRIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVHNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRKYGYYMCSIETALLGDYKYIYEGDPCSHGNDFTWDTVGSVRRTLDIGSHGCVGWL 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23554165 23564923 - MELO3C004081.2.1 Cme05g01423 328486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01423 1144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 950 962 IPR008271 GO:0004672|GO:0006468
Cme05g01423 1144 Pfam PB1 domain 43 127 IPR000270 GO:0005515
Cme05g01423 1144 Gene3D - 46 129 - -
Cme05g01423 1144 SUPERFAMILY Protein kinase-like (PK-like) 812 1086 IPR011009 -
Cme05g01423 1144 PRINTS Tyrosine kinase catalytic domain signature 1059 1081 IPR001245 GO:0004672|GO:0006468
Cme05g01423 1144 PRINTS Tyrosine kinase catalytic domain signature 907 920 IPR001245 GO:0004672|GO:0006468
Cme05g01423 1144 PRINTS Tyrosine kinase catalytic domain signature 944 962 IPR001245 GO:0004672|GO:0006468
Cme05g01423 1144 PRINTS Tyrosine kinase catalytic domain signature 1015 1037 IPR001245 GO:0004672|GO:0006468
Cme05g01423 1144 MobiDBLite consensus disorder prediction 1 25 - -
Cme05g01423 1144 MobiDBLite consensus disorder prediction 763 816 - -
Cme05g01423 1144 ProSiteProfiles Protein kinase domain profile. 825 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01423 1144 PANTHER SERINE-THREONINE PROTEIN KINASE 18 1090 - -
Cme05g01423 1144 Gene3D Phosphorylase Kinase; domain 1 811 911 - -
Cme05g01423 1144 SMART PB1_new 42 127 IPR000270 GO:0005515
Cme05g01423 1144 ProSitePatterns Protein kinases ATP-binding region signature. 831 852 IPR017441 GO:0005524
Cme05g01423 1144 CDD STKc_MAP3K-like 831 1088 - -
Cme05g01423 1144 SUPERFAMILY CAD & PB1 domains 44 133 - -
Cme05g01423 1144 MobiDBLite consensus disorder prediction 1 21 - -
Cme05g01423 1144 Gene3D Transferase(Phosphotransferase) domain 1 912 1098 - -
Cme05g01423 1144 CDD PB1_UP2 31 127 - -
Cme05g01423 1144 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 18 1090 - -
Cme05g01423 1144 SMART serkin_6 825 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01423 1144 Pfam Protein tyrosine and serine/threonine kinase 826 1088 IPR001245 GO:0004672|GO:0006468
Cme05g01423 1144 MobiDBLite consensus disorder prediction 419 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01423 Cme-Chr5:23554165 Cme12g01538 Cme-Chr12:22845384 3.86E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64897 PF07714 PK_Tyr_Ser-Thr 1.20E-61 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01423 - - csv:101215475 2167.12