Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01423 | ATGGATAGCCCTTTGACGCGGAGCTCTACTCCTAATTCCTCACCTATCTCAAATCCTGGTTCACATGATGAAAACCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACAAGGATTGTGAGTGTTCCAAGGGATATTACCTACGAGGAATTGATGATTAAGATGAGGGAACTATATGATGGGGCTGCAGTGTTGAAATACCAGCAACCAGATGAGGATCCTGATGCCCTTGTGTCAGTTGTCAACGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGCGATGGGTTCACTAGGCTCAGGATATTCTTGTTTTCGCATCCTGAACAAGATGCTTCTTTGCCCTTTGTGGATGGGGATGAAAGGGATACTGAGAGGCGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAACAAAATTCCCCTGCACTTAGTGGCATAGATGATATGCATGGGACTGAACATTTTTTGAATCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACCATACCACCTGCATCAGCTCACAATCCCTCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCTCAAAGGTATGGTGAAATGGAAGCTCCATGGAGTCCTGCTTTACTTTCACCTAGGCATCATGGTCCATATGATTCAAGACCAATGGGAGACTATCCATCTTCTCCATTTGCACGGTACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAACAAATGAATCACCAACATATGTATGAACATCAACCACAGTATAATGAGAATATTGTATGGCTGCCAAATGGAACAATTAGTGAAGAATCAGGTTTCCCAGGTAATATTTTACATGGACATGGTGTCCCAGATGGGAATAGTTCTTGTGAACACTGTCGAGCAAATTTTCATCGGTATCAAGCGCACATGGAGCAAGTTAATACGATAAATGGGCTTCCCCTTGAATATGCTCAGAATAGGGAGGCCTTGACGCAGAAGGCAGACACAAAGTTCCATCATGGTATTTTTCCAAACGAGCAGAATATTAATGATTACCGATCTGCTTATAATGAGACACCTCCCCATGACAAAGGATGGATTATGCAACACCAAATGAGTGTGCGAGGGGATGACACGAGGACACATGCTTCTGGGACTGGGCGATTAAACGATCACTACATTGTGGATGGTTCTGGCTCAAATTTGCCTCCTACACAAAGTAATATTGCTGATGGCTACCACGCTTCAACAAATTTTCATGATGAGGTATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCCGAAGATCGTGGTGTTGGTTATATGCCTTATGGGTATGGTGGAGATCCTCATTATCCTCCAATGTCACAAAGACATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTGCATGTTGCTCCCCCATATGAAGCATCTGTTTTCCATCAACAAGGGAATGCAAGCATAAATCCAGGATATATCAAAGCCATGCAAGATGGTAGTCCACGAATTCATATTGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAAAAAATTTTGGGTATTGATGGAGCAACTGGTACAGAGCATGTTCTGAAGACCAACTCAACCACAGTTGGCCATGACAATCAACAATTCACAAGTTTAGAACATATCCAACCACATCTTGATAAAATAAACCTTGTCGCTTCTCCTATGCAGAGGTCAGATTCATCTTCAGCATTTATTCAAGAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCACAACTAAGGGCTGTTAGTGCGGTTAATGAAGCTATGATGATGGAAAGGAAAGTTGTGCTTGGGGAAGGAAATGGACACATGATAAAGGATATGGGGAAAGCTGACATCTCTGAAGCACACACTGCATCTCATCCAGGGCAGAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCATTAAGTTCAGCTTGCACGAACTCTGCAGTAGAAAATGGTGATGGCTTGAAACCTTCTGTAGAGACTCTTGAAAAACCTAAACTATCTGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGAAAAGAGCAGCACTTGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCTAAGGAGACCTGATTCAATAGAGAAAAAAGAGACAACAAATGAGCGACACTCCTCGAATAACCACGTGGAACCTGAGTTGGAAACTGAGAGTGAAAATCAAAGCTCCAGAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTATCATGGGAAGTGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGAGAACGTTTGATTGCTGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTCGTTTCCTTCTACGGCATTGTCCGTGATGGTCCAGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCGTTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATTGATCGTCGGAAGAGGCTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAAAGGCCTGTTTGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGGCAACACACGTTAGTATCAGGAGGGGTTCGTGGAACTTTGCCTTGGATGGCGCCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACGGAGAAGATTGATGTTTACTCATTCGGAATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCAATAATCGGAGGAATTGTGCATAATTGTTTACGCCCTGAAATCCCGACATGGTGCGACCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAAGTATGGTTATTATATGTGCTCTATAGAGACTGCATTGCTGGGAGACTACAAGTACATATATGAAGGAGATCCATGTAGTCATGGGAATGATTTCACTTGGGATACCGTTGGAAGCGTACGCCGTACGTTGGACATTGGCTCTCATGGCTGTGTTGGGTGGCTATGA | 3435 | 43.0 | MDSPLTRSSTPNSSPISNPGSHDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDASLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQQNSPALSGIDDMHGTEHFLNPMNIEGSLHTQRSCEPLSPYHLHQLTIPHVGSGGQQQSVAQRYGEMEAPWSPALLSPRHHGPYDSRPMGDYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTISEESGFPGNILHGHGVPDGNSSCEHCRANFHRYQAHMEQVNTINGLPLEYAQNREALTQKADTKFHHGIFPNEQNINDYRSAYNETPPHDKGWIMQHQMSVRGDDTRTHASGTGRLNDHYIVDGSGSNLPPTQSNIADGYHASTNFHDEVFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMSQRHMPGNASWRNVQNPLHVAPPYEASVFHQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQKILGIDGATGTEHVLKTNSTTVGHDNQQFTSLEHIQPHLDKINLVASPMQRSDSSSAFIQEKMVAPFHPSQNPQLRAVSAVNEAMMMERKVVLGEGNGHMIKDMGKADISEAHTASHPGQNNTDDTYSKVAPLESLSSACTNSAVENGDGLKPSVETLEKPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETALRRPDSIEKKETTNERHSSNNHVEPELETESENQSSRIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVHNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRKYGYYMCSIETALLGDYKYIYEGDPCSHGNDFTWDTVGSVRRTLDIGSHGCVGWL | 1144 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 23554165 | 23564923 | - | MELO3C004081.2.1 | Cme05g01423 | 328486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01423 | 1144 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 950 | 962 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g01423 | 1144 | Pfam | PB1 domain | 43 | 127 | IPR000270 | GO:0005515 | |
Cme05g01423 | 1144 | Gene3D | - | 46 | 129 | - | - | |
Cme05g01423 | 1144 | SUPERFAMILY | Protein kinase-like (PK-like) | 812 | 1086 | IPR011009 | - | |
Cme05g01423 | 1144 | PRINTS | Tyrosine kinase catalytic domain signature | 1059 | 1081 | IPR001245 | GO:0004672|GO:0006468 | |
Cme05g01423 | 1144 | PRINTS | Tyrosine kinase catalytic domain signature | 907 | 920 | IPR001245 | GO:0004672|GO:0006468 | |
Cme05g01423 | 1144 | PRINTS | Tyrosine kinase catalytic domain signature | 944 | 962 | IPR001245 | GO:0004672|GO:0006468 | |
Cme05g01423 | 1144 | PRINTS | Tyrosine kinase catalytic domain signature | 1015 | 1037 | IPR001245 | GO:0004672|GO:0006468 | |
Cme05g01423 | 1144 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cme05g01423 | 1144 | MobiDBLite | consensus disorder prediction | 763 | 816 | - | - | |
Cme05g01423 | 1144 | ProSiteProfiles | Protein kinase domain profile. | 825 | 1094 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01423 | 1144 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 18 | 1090 | - | - | |
Cme05g01423 | 1144 | Gene3D | Phosphorylase Kinase; domain 1 | 811 | 911 | - | - | |
Cme05g01423 | 1144 | SMART | PB1_new | 42 | 127 | IPR000270 | GO:0005515 | |
Cme05g01423 | 1144 | ProSitePatterns | Protein kinases ATP-binding region signature. | 831 | 852 | IPR017441 | GO:0005524 | |
Cme05g01423 | 1144 | CDD | STKc_MAP3K-like | 831 | 1088 | - | - | |
Cme05g01423 | 1144 | SUPERFAMILY | CAD & PB1 domains | 44 | 133 | - | - | |
Cme05g01423 | 1144 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cme05g01423 | 1144 | Gene3D | Transferase(Phosphotransferase) domain 1 | 912 | 1098 | - | - | |
Cme05g01423 | 1144 | CDD | PB1_UP2 | 31 | 127 | - | - | |
Cme05g01423 | 1144 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 18 | 1090 | - | - | |
Cme05g01423 | 1144 | SMART | serkin_6 | 825 | 1094 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01423 | 1144 | Pfam | Protein tyrosine and serine/threonine kinase | 826 | 1088 | IPR001245 | GO:0004672|GO:0006468 | |
Cme05g01423 | 1144 | MobiDBLite | consensus disorder prediction | 419 | 445 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01423 | Cme-Chr5:23554165 | Cme12g01538 | Cme-Chr12:22845384 | 3.86E-29 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64897 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-61 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01423 | - | - | csv:101215475 | 2167.12 |