Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01441 ATGGATCATGAACAAAGGAACGGCCAAGATTTCATCTTCAAATCAAAGCTCCCAGACATTTACATCCCAAACCACCTCCCTCTCCATACCTATTGCTTTGAACACCTCGCCCAATTCCAACACCGGCCTTGCCTCATCAACGGCACCACCGGCCGCATCCACACCTACGCCGAGGTCGACCTAGCAGCGAGACGTTTTGCTGCGGGGCTGAGCAAGATCGGCATCGGACAAGGCGACGTGATAATGCTCATGCTTCAGAACAGCCCTGAGTTTGTGTTTGCATTCCTCGGTGCGTCGTTTGCTGGTGCAATTGCCACGACCGCGAACCCATTGTATAAGCCAGGAGAGATAGTGAAGCAGGCGGTGGCGGCGAGGGCGAAGGTGATAATTACACAAGGGGAGTTTGTGGAGAAGGTGTGGGAATTTGCAGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCTCGTCGGCCTCGGAGTCAGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCCGATGAGAATGATATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCGGGAACTACTGGAGTTCCAAAAGGAGTTATGCTAACGCATAAATCTCTTGTTACAAGCGTAGCTCAGCAGGTGGATGGAGAGAATCCAAATGTAAACATGAATAGCAAGGATGTGATCATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCTGTTCTCCTCTGTGGACTACGTGTCGGCGCTGCCATTCTCATCCTTCAAAAATACGACATGTCGTCTCTTCTCCGCCTCATTCAAATCCACAAAGCCACAATTGCCCCCTTTGTCCCTCCCATCGTCTTGGACTTTGCCAAAAACCCCGATATCCACAATTACAACTTATCATCTATTCGAATCGTCATGTCGGGTGCTGCCCCCATGGGGAAGGACCTCGAGGACACCGTCAAAGCTAGACTCCCCAATGCCATACTCGGACAGGGGTATGGAATGACGGAGGCAGGGCCAGTGCTGTCGATGTGTTTAGGATTTGCAAAGGAACCATTCAACGTAAAATCAGGTGCATGCGGCACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTCAATCTTCTCTTTCTTTACCACGTAATCACCCTGGTGAGATCTGCATACGTGGCCCCCAGATCATGAAAGGTTATCTTAATAACGAAGAAGCAACCGAGAAGACTATAGATAAAGACGGGTGGCTCCACACAGGAGACTTAGGGTTCATCGACGATGACGATGAGATCTTCATTGTTGATCGATTAAAGGAACTGATCAAATACAAAGGATACCAAGTTGCCCCAGCTGAGCTTGAAGCTCTCTTGACTTCGAACCCTAACATTACTTCAGCTGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCGTTTGTTGTTAGATCTAAAGGTTCCAAAATTAGTGAGAATGACATCAAAAACTATATTTCAGATCAGGTTATATATTACAAAAGAATCAGAAAGGTTTTCTTTGTGGACTCGATTCCAATGGCTCCTTCAGGCAAGATATTGAGGAAAGTTCTAAAAGCTCAGTTGGAGGCTGGTGTCTTTTAA 1641 47.04 MDHEQRNGQDFIFKSKLPDIYIPNHLPLHTYCFEHLAQFQHRPCLINGTTGRIHTYAEVDLAARRFAAGLSKIGIGQGDVIMLMLQNSPEFVFAFLGASFAGAIATTANPLYKPGEIVKQAVAARAKVIITQGEFVEKVWEFAVENGVKILCTDSSSASESAGCLRFSEVMEADENDIPAVKINSNDVVALPFSSGTTGVPKGVMLTHKSLVTSVAQQVDGENPNVNMNSKDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLRLIQIHKATIAPFVPPIVLDFAKNPDIHNYNLSSIRIVMSGAAPMGKDLEDTVKARLPNAILGQGYGMTEAGPVLSMCLGFAKEPFNVKSGACGTVVRNAEMKIIHPQSSLSLPRNHPGEICIRGPQIMKGYLNNEEATEKTIDKDGWLHTGDLGFIDDDDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNITSAAVIPMEDEAAGEIPVAFVVRSKGSKISENDIKNYISDQVIYYKRIRKVFFVDSIPMAPSGKILRKVLKAQLEAGVF 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23772562 23777959 - MELO3C004092.2.1 Cme05g01441 328504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01441 546 Gene3D - 442 544 IPR045851 -
Cme05g01441 546 Gene3D - 3 441 IPR042099 -
Cme05g01441 546 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Cme05g01441 546 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Cme05g01441 546 SUPERFAMILY Acetyl-CoA synthetase-like 13 543 - -
Cme05g01441 546 Pfam AMP-binding enzyme 34 447 IPR000873 -
Cme05g01441 546 CDD 4CL 22 537 - -
Cme05g01441 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 542 - -
Cme05g01441 546 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 542 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01554 Cme05g01441 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01441 Cme-Chr5:23772562 Cme12g00392 Cme-Chr12:5642969 6.40E-130 dispersed
Cme03g01953 Cme-Chr3:27485776 Cme05g01441 Cme-Chr5:23772562 2.88E-11 transposed
Cme04g01757 Cme-Chr4:25168974 Cme05g01441 Cme-Chr5:23772562 0 transposed
Cme11g00620 Cme-Chr11:7131535 Cme05g01441 Cme-Chr5:23772562 0 transposed
Cme02g01554 Cme-Chr2:22576638 Cme05g01441 Cme-Chr5:23772562 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01441 K01904 - csv:101210868 1024.23