Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01491 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCGCCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAACATAGATGGATTTAACCGTGCAGTTCATGGAAATGAAAAGCCATCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCCGAAGGACTTAAATCAATTGGCCGATCGCTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCGGAGGATCTTAAAGAGTCAAAGAAGCAAATCTTTGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTTGCAGTATCTGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCGACACTCAAACTGTCTTGGAATCGATAAAAAACTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCCTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGACGGTATTTCATCGTTGACCTGTTGTCTGTGCTGCCCCTGCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAGAGGTTCAGATGTATACGTGACAAAACAGGCCCTTCTTTTAATTGTATTCCTTCAATATATCCCACGATTTCTTAGAATGTTACCATTGGCTTCAGAGTTGAAAAGGACAACAGGTGTTTTTGCAGAAACTGCTTGGGCAGGTGCTGCGTATTATTTGCTATTATATATGCTTGCAAGCCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGGAATGATACATGTTGGCAGAAGTTTTGTAATGCCCCTTGCAAGAAAGATTTCTTGTATTGTGGTAACCAAAACATGGAAGGTTATGCAAGTTGGAACCAGACAGGTGTCGATGGCCTTAAGTCAAGTTGCGAACCTGATGATCAAAATAAGCAGTTTGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCGTCCAAGAATTTCATCACAAAATATTGTTACTGTCTGTGGTGGGGACTACAAAATTTAAGTACGCTTGGGCAGGGGCTAAAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTATCTTCAATCTCTAACCATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGCTTGCTGCCGCAGGAACTTCGGGAGAGAGTCCGGCGTTATGATCAGTACAAGTGGTTGGAGACTCGTGGGGTGGATGAACAAAGTTTGGTTCAAACTCTACCTAAGGATCTTAGAAGGGATATTAAGCGGCACCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGATGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAAGGCGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTTGAGAGTGTGACCACAGATGGTGGACGTAGTGGATTTTTCAACCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGACCCGAAATCTGGTTCGAATCTTCCATCTTCTACGAGGACGGTAAAGGCCATTACAGAGGTTGAGGCTTTTGCCCTTGTCGCTGAAGAGTTGAAATTTGTGGCCAGCCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCGCAGCAATGGAGGACCTGGGCTGCTTGCTTCATCCAAGCGGCATGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGCTGCAGCAGAAGAATCTGAGGGATCTCAAACTGCCACAAGTGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGCGTTCAGCGATATCGAAACGCAAAGAGCGCTCAGGAATTGATAAAATTGCAGAAACCTCCAGAGCCAGATTTTAGTGCTGATGATGCAGATTGA 2202 43.87 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNEKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKQIFDPQDKLLLFLNKLFVISCIFAVSVDPLFFYVPVINRHSNCLGIDKKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIVDLLSVLPLPQIVVWRFLQRSRGSDVYVTKQALLLIVFLQYIPRFLRMLPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKFCNAPCKKDFLYCGNQNMEGYASWNQTGVDGLKSSCEPDDQNKQFDFGIFQQALSSGIAASKNFITKYCYCLWWGLQNLSTLGQGLKTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEAAAEESEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24333092 24344555 + MELO3C004133.2.1 Cme05g01491 328554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01491 733 CDD CAP_ED 504 635 IPR000595 -
Cme05g01491 733 Pfam Cyclic nucleotide-binding domain 529 614 IPR000595 -
Cme05g01491 733 SMART cnmp_10 504 635 IPR000595 -
Cme05g01491 733 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 730 - -
Cme05g01491 733 SUPERFAMILY cAMP-binding domain-like 433 624 IPR018490 -
Cme05g01491 733 Pfam Ion transport protein 109 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme05g01491 733 Gene3D - 109 429 - -
Cme05g01491 733 SUPERFAMILY Voltage-gated potassium channels 101 426 - -
Cme05g01491 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 730 - -
Cme05g01491 733 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme05g01491 733 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme05g01491 733 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme05g01491 733 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme05g01491 733 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme05g01491 733 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme05g01491 733 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme05g01491 733 Gene3D Helix hairpin bin 432 495 - -
Cme05g01491 733 ProSiteProfiles cAMP/cGMP binding motif profile. 504 588 IPR000595 -
Cme05g01491 733 Gene3D Jelly Rolls 502 622 IPR014710 -
Cme05g01491 733 ProSiteProfiles IQ motif profile. 640 669 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01904 Cme-Chr4:26747348 Cme05g01491 Cme-Chr5:24333092 0 dispersed
Cme04g01939 Cme-Chr4:27061927 Cme05g01491 Cme-Chr5:24333092 0 dispersed
Cme05g01491 Cme-Chr5:24333092 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme09g00231 Cme-Chr9:1767519 Cme05g01491 Cme-Chr5:24333092 2.08E-116 dispersed
Cme12g01221 Cme-Chr12:20340316 Cme05g01491 Cme-Chr5:24333092 1.24E-14 dispersed
Cme05g01491 Cme-Chr5:24333092 Cme09g01973 Cme-Chr9:23623350 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01491 K05391 - csv:101219180 1392.48