Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01512 ATGGCCACCAATGATCTAAACAAAGAGCTCTCAAAGAAAACAAACATATTTGGTCTAAAAGTATGGGAAGTCGTTGGAATTGGAGTTGGCGTTTTTATAATCTCAATCCTCTGTATTCTCTCACTTTGTTTAACCTCATTCAACAAGAAATCAAAAAAATCATCACCACCCAAATTTCCTCTTACTCAAATCCCATCTCATTCAAAGGACATAAAGGCAATTCATATAACAACGACTACTGATCACAAAAAGCCAACAACAACCCAAACGGGAAAATTTGAAACCAATAATAATAATTACAGTGGTGAATCAGGATCATTGTTTCATCCATTGAGTTATGGCTATGGATCACAATCAGGAGATGAAGGCAGCTCGGGAACTGTCACAACAACAACGATGTACCGACGTTCGACGTCGCCTACGACAACGACAATGACGGCTCCTTCGCCGTTGTCAGGTATGCCGGAGATGTCGCAATTGAGGTGGGGGTACTGGTTTACTTTGAGAGAGCTGGATTTGGCTACTAATTTGTTCTCAGAAGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTTTAGAGGAAGGTTGTTGAATGGGACACCAGTGGCAGTTAAGAAGATTTTTAATGGACAAGGCCAAGCAGAGAAAGAATTTAGAGCGGAAGTTGAGGCAATTGGGCATGTAAGACATAAGAATCTTGTTCGTCTTTTGGGATATTGCATCGAAGGGACTCATAGGATGTTGGTGTATGAGTACATAAACAATGGAAGCTTAGAGCTATGGCTACATGAAGGAATGGGAGAGAATACATATCTTACATGGGAGGCTAGAATGAAGATCATGTTGGGGACAGCCAAAGGAATTGCATACTTACATGAAGCCATTGAGCCAAAGGTGGTGCATAGAGACATAAAGGCTAGCAACATACTAATAGATGAAAATTTCAATGCCAAAGTATCAGATTTTGGGTTAGCAAAGTTGATGGATGCTAACAAAACTCATGTCACAACAAGAGTTATGGGCACATTTGGTTACGTGGCTCCTGAGTATGCATACACCGGACTTCTAAATGAGAAGAGCGATGTGTATAGCTTTGGAGTTGTGTTGGTAGAAACAATCACAGGAAGAGATCCAGTAGACTATGGACGTCCACCCAAACAGGTGAACGTGGTGGATTGGTTAAAGATGATGATTGGAAGTAGGAGATGTGAAGAAGTGGTAGACCCAAAAATAATAGGAGTTGGAGGAAGGCCATCGACAAGAGGGTTGAAAAGAGTTCTATTGGTTGCATTGAGATGTGTTGATCCTGATTTTGACAAGAGGCCAAAAATGGGCCAAGTTGTTCGAATGCTTGAGTCTCAAGATCATCATCATCATTCATTATAA 1389 40.96 MATNDLNKELSKKTNIFGLKVWEVVGIGVGVFIISILCILSLCLTSFNKKSKKSSPPKFPLTQIPSHSKDIKAIHITTTTDHKKPTTTQTGKFETNNNNYSGESGSLFHPLSYGYGSQSGDEGSSGTVTTTTMYRRSTSPTTTTMTAPSPLSGMPEMSQLRWGYWFTLRELDLATNLFSEENLIGEGGYGVVFRGRLLNGTPVAVKKIFNGQGQAEKEFRAEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYINNGSLELWLHEGMGENTYLTWEARMKIMLGTAKGIAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMDANKTHVTTRVMGTFGYVAPEYAYTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPPKQVNVVDWLKMMIGSRRCEEVVDPKIIGVGGRPSTRGLKRVLLVALRCVDPDFDKRPKMGQVVRMLESQDHHHHSL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24527311 24530866 + MELO3C004155.2.1 Cme05g01512 328575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01512 462 ProSitePatterns Protein kinases ATP-binding region signature. 184 207 IPR017441 GO:0005524
Cme05g01512 462 ProSiteProfiles Protein kinase domain profile. 178 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01512 462 SMART serkin_6 178 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01512 462 Gene3D Transferase(Phosphotransferase) domain 1 254 461 - -
Cme05g01512 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Cme05g01512 462 PANTHER OS01G0323000 PROTEIN 6 458 - -
Cme05g01512 462 SUPERFAMILY Protein kinase-like (PK-like) 152 457 IPR011009 -
Cme05g01512 462 Pfam Protein kinase domain 179 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01512 462 Gene3D Phosphorylase Kinase; domain 1 152 253 - -
Cme05g01512 462 CDD STKc_IRAK 184 453 - -
Cme05g01512 462 PANTHER OS01G0323000 PROTEIN 6 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01512 Cme-Chr5:24527311 Cme11g01574 Cme-Chr11:23333440 0 dispersed
Cme05g01512 Cme-Chr5:24527311 Cme01g01543 Cme-Chr1:20540304 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64898 PF00069 Pkinase 3.60E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01512 - - cmo:103493978 857.44