Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01544 ATGGAAGAGTTTTACAGGCTTAACAACCCTGTTATAACCTCATATTCTAATGGTGTTGTTGGAAGTGAAGCCATTGCAAGTACAAGCTGTGGAGAGATTCATGAAGCTTTAATGGTGGATGATGATATGCTTCAGCTTGAAGCTGAGGTTACAACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAACTTGTATCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGTCGTGAAAATCACCCTTCTAGATCCTCTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTCATGGAATCGTATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAATTTGTGTAAAGGATCCTTTACCATGATGTTGGATTCTCGCTCTGCCATGAATGACGAAGTATCTGGGACTCCAGAGGAAGAACCGAGCAGCTACGAGGAGGTGGAAATGCCGAGGAATCACGAGCCGTTCTGCACACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAAGAGAAGCTACCAAAAGATGCAAGAATGGCTTTACTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGTAATTGCAGTGCAATGGACAGAAGAGGAAAAATCAAAACTATCTATTACTACTGGTCTAGACCAAAAGCAAATTAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCCGAAGACATGCGATTCGTGCTCATGGACGGAGTCGGGGCCGGGGAATGCATGAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAAGCCATGTAATTTGA 987 41.24 MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTMMLDSRSAMNDEVSGTPEEEPSSYEEVEMPRNHEPFCTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLDWWNTHYKWPYPTVIAVQWTEEEKSKLSITTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGVGAGECMKGSNFYDNGETGSHVI 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24801281 24804911 + MELO3C004181.2.1 Cme05g01544 328607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01544 328 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Cme05g01544 328 SUPERFAMILY Homeodomain-like 226 303 IPR009057 -
Cme05g01544 328 Gene3D - 222 300 - -
Cme05g01544 328 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 305 - -
Cme05g01544 328 SMART HOX_1 226 298 IPR001356 GO:0003677
Cme05g01544 328 Pfam Homeobox KN domain 244 290 IPR008422 GO:0003677|GO:0006355
Cme05g01544 328 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Cme05g01544 328 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Cme05g01544 328 Pfam ELK domain 204 225 IPR005539 GO:0003677
Cme05g01544 328 SMART ELK_2 204 225 IPR005539 GO:0003677
Cme05g01544 328 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Cme05g01544 328 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 305 - -
Cme05g01544 328 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Cme05g01544 328 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Cme05g01544 328 CDD homeodomain 236 294 IPR001356 GO:0003677
Cme05g01544 328 ProSiteProfiles 'Homeobox' domain profile. 262 294 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01983 Cme-Chr2:26093307 Cme05g01544 Cme-Chr5:24801281 2.34E-27 dispersed
Cme05g01544 Cme-Chr5:24801281 Cme08g00429 Cme-Chr8:2617977 9.59E-67 dispersed
Cme05g01544 Cme-Chr5:24801281 Cme10g00541 Cme-Chr10:3457746 4.63E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01544 - - csv:101203403 613.224