Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01548 ATGGAATTTGAACAACAACAACAAGAACAACAGGAAGCACTTCTGTTGCAAAAAGTTTGTGCCCTTTACAACCAAATCTCAAGCCTTTCTAGCCTTAAGCCTTGTAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCACAGCAGCCACCAGCTGCCCCAATTGGCTTTGATGTAGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGAGCTCATCTCATTCAACTTTGTGCTAAAGCTGAGGCTCTTCTTGAACTTCATTTCTCTTCCCTTTTGGCTTCTTCTTTTCATCATCCTATTTCTAATTTGTCTATCTTCCCTTACTACTCTAACTACTTGAAGCTTTCCCTTCTCGAGTTTGATATTCTTCGATCCCATTCTCGTCGTCTCCCCAATAAAGTTGCCTTCGTTGGCTCTGGTCCCCTCCCGCTCTCCTCCATTGTCTTGGCGTCTATTCATCTTAAGGGTACTATTTTCCACAACTTTGACATTGATCCAACAGCAAACACTATGGCAAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTTCACACAAAAGATGTAATGGAAGTAACAAAGGGATTAAAAGATTATGAAGTAGTGTTCTTAGCAGCATTAGTTGGATTAGAAGAGGAAGAAAAAGGAAGAGTTTTAAAGCATTTGGGGAAACATATGGCAGCTGGTTCATATTTGATGCTAAGAAGTGCTCATGGAGCAAGAGCATTTTTGTACCCTGTTGTTGATATTTGTACTGTTGAAGCTTCTGGATTTGAGATTTTGTCTGTGTTCCATCCCACCGATGAAGTTATTAACTCTGTTGTTATTGCAAGGAAGAAAGTCGTGTTCGATCAAAGCTCGGTCGAGGACGAGGAGGAGGAGGAGGAGGAGGAGAAGCCAGGTATTTTAGTCGATACTTCTTCTATTGTGTTGGCTGAGAAATGCTCTGGGTTTAATGGCTTTACTCCCATCATTGAAGAGCAACTTTCTTGA 1014 41.52 MEFEQQQQEQQEALLLQKVCALYNQISSLSSLKPCKNVDTLFTQLVLTCSQQPPAAPIGFDVASLSQPLQAMRAHLIQLCAKAEALLELHFSSLLASSFHHPISNLSIFPYYSNYLKLSLLEFDILRSHSRRLPNKVAFVGSGPLPLSSIVLASIHLKGTIFHNFDIDPTANTMASQLVCSDPDLSQRMIFHTKDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLKHLGKHMAAGSYLMLRSAHGARAFLYPVVDICTVEASGFEILSVFHPTDEVINSVVIARKKVVFDQSSVEDEEEEEEEEKPGILVDTSSIVLAEKCSGFNGFTPIIEEQLS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24818750 24820898 - MELO3C004184.2.1 Cme05g01548 328611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01548 337 PANTHER NICOTIANAMINE SYNTHASE 3 8 288 IPR004298 GO:0030410|GO:0030418
Cme05g01548 337 Pfam Nicotianamine synthase protein 9 288 IPR004298 GO:0030410|GO:0030418
Cme05g01548 337 Gene3D Vaccinia Virus protein VP39 16 288 IPR029063 -
Cme05g01548 337 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 7 291 IPR004298 GO:0030410|GO:0030418
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00033 Cme05g01548 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01552 Cme-Chr2:22558673 Cme05g01548 Cme-Chr5:24818750 2.10E-91 dispersed
Cme05g01548 Cme-Chr5:24818750 Cme05g01549 Cme-Chr5:24830592 6.75E-103 tandem
Cme02g00033 Cme-Chr2:324312 Cme05g01548 Cme-Chr5:24818750 1.08E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01548 K05953 - csv:101203651 575.474