Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01549 ATGTGTTGCCAAAGTCTTCTTTTGGTCCAAAAAATCTCAGAGCTTTACCACAAGATCTCCACTCTTGAGAGCCTCAAACCCTCTAAACATGTCAACTCCCTCTTCTCTCAACTTGTACTCCTCATTTGCACTCCCCCGATGGCCTCCTCTTCTCCCTCGTCCATCGACGTCTCGTCGCTCTGCTCCTCCATCCAAACCATGAGATCCAATCTCATCAAGCTCTGCGGCGAGGCCGAGTCCCTTCTCGAGCATCACTACTCCACCATTTTATCTTCCCACCAAAACCCTCTCGACCATCTCTCCCTTTTCCCTTATTACTCCAACTACCTCAAACTAACTCACTTAGAATTCTCCATTTTGAACCACCACATTACGCCGCCTCCCTCTAAAGTGGCATTTGTTGGCTCCGGTGCACTTCCCTTCTCGTCTATCATCATGGCCTTGAAGTACCTCCCGAAAACCGAGTTTCACAACTTCGATCTCGACCCATCTGCCAATGCCAAAGCATCGATGCTGGTAGCAGGCGACGTGGAGCTGTCGAGGCGAATGGTGTTCCACACGACCGACATCATGGAGGTTGGGTCGGAAGAGTTGAGGGAGTTCGAGGTGGTGTTTTTGGCGGCGTTGGTGGGAATGGAGAGAGAAGAGAAGGCGAAGGTGATCGAGCATTTAAGGAAGAATATGAGGGGTGGGGCGTTGTTGATGTTGAGGAGCGCATATGGTGCACGGGCCTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGGGGGTTCGAGATTCTTACGGTGTTTCATCCAACGGATGAAGTTATTAATTCGATTGTGTTGGCACGATTATAA 840 50.0 MCCQSLLLVQKISELYHKISTLESLKPSKHVNSLFSQLVLLICTPPMASSSPSSIDVSSLCSSIQTMRSNLIKLCGEAESLLEHHYSTILSSHQNPLDHLSLFPYYSNYLKLTHLEFSILNHHITPPPSKVAFVGSGALPFSSIIMALKYLPKTEFHNFDLDPSANAKASMLVAGDVELSRRMVFHTTDIMEVGSEELREFEVVFLAALVGMEREEKAKVIEHLRKNMRGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24830592 24831431 - MELO3C004185.2.1 Cme05g01549 328612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01549 279 Pfam Nicotianamine synthase protein 7 278 IPR004298 GO:0030410|GO:0030418
Cme05g01549 279 Gene3D Vaccinia Virus protein VP39 2 279 IPR029063 -
Cme05g01549 279 PANTHER SYNTHASE, PUTATIVE-RELATED 1 278 - -
Cme05g01549 279 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 279 IPR004298 GO:0030410|GO:0030418
Cme05g01549 279 PANTHER NICOTIANAMINE SYNTHASE 3 1 278 IPR004298 GO:0030410|GO:0030418
Cme05g01549 279 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 90 239 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01549 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101219339 499.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00033 Cme-Chr2:324312 Cme05g01549 Cme-Chr5:24830592 9.96E-106 dispersed
Cme05g01548 Cme-Chr5:24818750 Cme05g01549 Cme-Chr5:24830592 6.75E-103 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00033 CCT 1 274 Nicotianamine Synthase Gene Family AT1G09240 58.2 7.4e-91 330.9
Cme05g01549 . 1 278 Nicotianamine Synthase Gene Family AT1G09240 58.9 1.3e-87 320.1
Cme05g01548 CCT 11 286 Nicotianamine Synthase Gene Family AT1G09240 58.5 2.2e-87 319.3
Cme02g01552 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 54.5 6.3e-74 274.6
Cme02g00033 CCT 3 274 Nicotianamine Synthase Gene Family AT1G56430 59.7 5.0e-95 344.7
Cme05g01548 CCT 11 286 Nicotianamine Synthase Gene Family AT1G56430 59.6 2.0e-91 332.8
Cme05g01549 . 3 278 Nicotianamine Synthase Gene Family AT1G56430 59.7 6.0e-88 321.2
Cme02g01552 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 54.1 1.2e-77 287.0
Cme02g00033 CCT 1 274 Nicotianamine Synthase Gene Family AT5G04950 56.3 1.7e-90 329.7
Cme05g01549 . 1 278 Nicotianamine Synthase Gene Family AT5G04950 56.9 6.9e-89 324.3
Cme05g01548 CCT 11 286 Nicotianamine Synthase Gene Family AT5G04950 57.9 1.7e-87 319.7
Cme02g00033 CCT 1 274 Nicotianamine Synthase Gene Family AT5G56080 56.5 3.4e-88 322.0
Cme05g01548 CCT 14 286 Nicotianamine Synthase Gene Family AT5G56080 57.7 5.0e-87 318.2
Cme05g01549 . 1 278 Nicotianamine Synthase Gene Family AT5G56080 56.1 1.9e-86 316.2
Cme02g01552 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 50.2 7.2e-70 261.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125