Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01549 ATGTGTTGCCAAAGTCTTCTTTTGGTCCAAAAAATCTCAGAGCTTTACCACAAGATCTCCACTCTTGAGAGCCTCAAACCCTCTAAACATGTCAACTCCCTCTTCTCTCAACTTGTACTCCTCATTTGCACTCCCCCGATGGCCTCCTCTTCTCCCTCGTCCATCGACGTCTCGTCGCTCTGCTCCTCCATCCAAACCATGAGATCCAATCTCATCAAGCTCTGCGGCGAGGCCGAGTCCCTTCTCGAGCATCACTACTCCACCATTTTATCTTCCCACCAAAACCCTCTCGACCATCTCTCCCTTTTCCCTTATTACTCCAACTACCTCAAACTAACTCACTTAGAATTCTCCATTTTGAACCACCACATTACGCCGCCTCCCTCTAAAGTGGCATTTGTTGGCTCCGGTGCACTTCCCTTCTCGTCTATCATCATGGCCTTGAAGTACCTCCCGAAAACCGAGTTTCACAACTTCGATCTCGACCCATCTGCCAATGCCAAAGCATCGATGCTGGTAGCAGGCGACGTGGAGCTGTCGAGGCGAATGGTGTTCCACACGACCGACATCATGGAGGTTGGGTCGGAAGAGTTGAGGGAGTTCGAGGTGGTGTTTTTGGCGGCGTTGGTGGGAATGGAGAGAGAAGAGAAGGCGAAGGTGATCGAGCATTTAAGGAAGAATATGAGGGGTGGGGCGTTGTTGATGTTGAGGAGCGCATATGGTGCACGGGCCTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGGGGGTTCGAGATTCTTACGGTGTTTCATCCAACGGATGAAGTTATTAATTCGATTGTGTTGGCACGATTATAA 840 50.0 MCCQSLLLVQKISELYHKISTLESLKPSKHVNSLFSQLVLLICTPPMASSSPSSIDVSSLCSSIQTMRSNLIKLCGEAESLLEHHYSTILSSHQNPLDHLSLFPYYSNYLKLTHLEFSILNHHITPPPSKVAFVGSGALPFSSIIMALKYLPKTEFHNFDLDPSANAKASMLVAGDVELSRRMVFHTTDIMEVGSEELREFEVVFLAALVGMEREEKAKVIEHLRKNMRGGALLMLRSAYGARAFLYPVVEACDLRGFEILTVFHPTDEVINSIVLARL 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24830592 24831431 - MELO3C004185.2.1 Cme05g01549 328612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01549 279 Pfam Nicotianamine synthase protein 7 278 IPR004298 GO:0030410|GO:0030418
Cme05g01549 279 Gene3D Vaccinia Virus protein VP39 2 279 IPR029063 -
Cme05g01549 279 PANTHER SYNTHASE, PUTATIVE-RELATED 1 278 - -
Cme05g01549 279 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 279 IPR004298 GO:0030410|GO:0030418
Cme05g01549 279 PANTHER NICOTIANAMINE SYNTHASE 3 1 278 IPR004298 GO:0030410|GO:0030418
Cme05g01549 279 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 90 239 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00033 Cme-Chr2:324312 Cme05g01549 Cme-Chr5:24830592 9.96E-106 dispersed
Cme05g01548 Cme-Chr5:24818750 Cme05g01549 Cme-Chr5:24830592 6.75E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01549 K05953 - csv:101219339 499.204