Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01568 ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCGAAATTGAAAGGTCCACCAGTGCAACGAAAACCATTGAAACATAGAGATTACGAGGTCGACCTCGAGTCCCGATTGGGAAAGACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATATTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGGGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTGGAACAGGTGCAAGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAGGAGCGTATACTAAAGCAACAACAAGAAGAAGAACAACGGAAGCGCGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCTTCCAAGAAGTGA 609 45.98 MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 24928871 24932132 - MELO3C004198.2.1 Cme05g01568 328631
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01568 202 SMART ZnF_U1_5 81 115 IPR003604 GO:0003676|GO:0008270
Cme05g01568 202 Gene3D Classic Zinc Finger 78 116 - -
Cme05g01568 202 MobiDBLite consensus disorder prediction 137 183 - -
Cme05g01568 202 Pfam Zinc-finger of C2H2 type 84 108 - -
Cme05g01568 202 Coils Coil 116 136 - -
Cme05g01568 202 MobiDBLite consensus disorder prediction 27 52 - -
Cme05g01568 202 MobiDBLite consensus disorder prediction 137 202 - -
Cme05g01568 202 SUPERFAMILY beta-beta-alpha zinc fingers 79 125 IPR036236 -
Cme05g01568 202 Coils Coil 22 42 - -
Cme05g01568 202 Coils Coil 144 181 - -
Cme05g01568 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 7 202 IPR040107 GO:0000398|GO:0005681
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41367 PF12171 zf-C2H2_jaz 1.80E-06 CL0361 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01568 K12848 - csv:101206387 326.25