Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01576 ATGGCGTCGAGAAACCGGACTTTGCTTTTTAAGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCTTCCCATGCTTCTGCATCGCCATCGACTAGCTCAGCTGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCCTCGTTGTTGCATCCGAATCGATCGTATGCTCCATTAAGTACCGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTGGGTCTACCTCCGGCTTGGGTTGATGTATCCGAAGAAATAGCTGCAAATGTGCAACGTGCACGAGTGAAGATGATGGAGTTGGCTAAAGCTCATGCAAAAGCTTTAATGCCTTCATTTGGTGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACGCAGGACATAACTAATTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTTTGTAGCTGGACCTTCAGAAGACTCCAATATCAGAAAAAATGTTCAGCGCTCTCTTGCCACCGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAACAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATCGATCGAGAATGGAGGACGATGATTTAGAACATATGGTATTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACTGCCGAAAGAGAGAGAGAGATCAAACAAGTTGTAGAATCCGTGAACGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATTGATAGAATAGATTACAATATTCAAAATGTTGCGACGACAGTTGAAGAGGGCCTTAAGCAACTGCAGAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGCGCGTCCGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTTTTGATCCTTAAAACCATACTATTTTGA 990 43.94 MASRNRTLLFKKYRDALRSVRVPTSSSHASASPSTSSAAGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLFVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIKQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24990079 24994360 - MELO3C004205.2.1 Cme05g01576 328639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01576 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme05g01576 329 Pfam SNARE domain 269 321 IPR000727 -
Cme05g01576 329 Gene3D - 79 287 - -
Cme05g01576 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Cme05g01576 329 SMART tSNARE_6 228 295 IPR000727 -
Cme05g01576 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Cme05g01576 329 CDD SNARE_syntaxin16 237 294 - -
Cme05g01576 329 SMART SynN_4 73 188 IPR006011 GO:0016020
Cme05g01576 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Cme05g01576 329 PANTHER SYNTAXIN-43-LIKE 1 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02227 Cme-Chr1:30993003 Cme05g01576 Cme-Chr5:24990079 2.26E-135 dispersed
Cme05g01576 Cme-Chr5:24990079 Cme06g02454 Cme-Chr6:31570340 1.41E-10 dispersed
Cme05g01576 Cme-Chr5:24990079 Cme08g01151 Cme-Chr8:8134579 5.22E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01576 K08489 - csv:101207998 606.675