Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme05g01581 | ATGGGGCATTTCTCCACCATGTTCAATGGGCTCGCAAGGTCATTTTCGTTCAAGAAAGGTAGAAATTCCGGAAGTCTCGATGACGGGGGAGGGCGAGAATCTGCAAAAGCCATGTTAAAGGATGCCAAAAGGAAAGACTCGATATTATGCACCTCCGGTGTCCTCAATTCAGAAGGTTCGGATACTTTTGCTTCAGTGTTTTCAAAGAAAGGCGAAAAAGGAGTAAACCAAGACTGCTGCATTGTATGGGAGGAATTTGGTTGCCAAGAAGACATGATATTCTGTGGGATTTTCGATGGGCATGGACCATGGGGTCATTTTGTTGCTAAGACGGTAAGAGAATCATTGCCACCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTTAGAAAAGAAGCATCAACGATATGATATATGGAAGCATTCTTATTTAAGAACTTGTGCTGCCATCGATCGCGAACTCGAGCAGCACCGTAAAATCGATACATTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTAGTCGTTTTGGCCAATGTAGGTGACTCCCGAGCAGTTTTAGCTACTACTTCAGATGATGGAAGTGTAGTAGCGGTTCAGCTCACAGTTGATTTCAAACCAAACCTACCTCAGGAGGCCGAACGGATAATTCAATGCAATGGGAGGGTGTTTTGTTTAAGTGACGAGCCAGGAGTTCATAGAGTTTGGCTTCCAAACGAGGAATCACCAGGATTGGCGATGTCGAGAGCCTTTGGTGATTATTGTATTAAAGACTTTGGACTCATTTCTGTGCCAGAAGTGACACATAGAAGTATAACAAGCAGAGACCAATTCATTATATTGGCCACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTGGAAATTGTATCGTCGACACCAGATAGAGCAAAAGCGTCAAAACGTCTGGTCGAGTGTGCAGTTCGGGCATGGAAGCGGAAGAGACGAGGCATTGCAATGGATGATATCTCAGCTATTTGCCTCTTCTTCCACTCCTCATCAGAGCAAGAACATCACCTTGTATCCCCACTATAG | 1104 | 44.93 | MGHFSTMFNGLARSFSFKKGRNSGSLDDGGGRESAKAMLKDAKRKDSILCTSGVLNSEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFLDPELDLEKKHQRYDIWKHSYLRTCAAIDRELEQHRKIDTFYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVAVQLTVDFKPNLPQEAERIIQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKDFGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPDRAKASKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSEQEHHLVSPL | 367 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 25027632 | 25031246 | - | MELO3C004209.2.1 | Cme05g01581 | 328644 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme05g01581 | 367 | SMART | PP2C_4 | 52 | 351 | IPR001932 | - | |
| Cme05g01581 | 367 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 362 | - | - | |
| Cme05g01581 | 367 | CDD | PP2Cc | 63 | 353 | IPR001932 | - | |
| Cme05g01581 | 367 | Pfam | Protein phosphatase 2C | 86 | 331 | IPR001932 | - | |
| Cme05g01581 | 367 | ProSiteProfiles | PPM-type phosphatase domain profile. | 63 | 353 | IPR001932 | - | |
| Cme05g01581 | 367 | SUPERFAMILY | PP2C-like | 55 | 354 | IPR036457 | - | |
| Cme05g01581 | 367 | Gene3D | - | 50 | 356 | IPR036457 | - | |
| Cme05g01581 | 367 | PANTHER | CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C | 1 | 362 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme05g01581 | Cme-Chr5:25027632 | Cme02g01389 | Cme-Chr2:20104680 | 2.87E-28 | dispersed | |
| Cme01g00348 | Cme-Chr1:2586841 | Cme05g01581 | Cme-Chr5:25027632 | 5.87E-107 | transposed | |
| Cme03g00675 | Cme-Chr3:11671461 | Cme05g01581 | Cme-Chr5:25027632 | 4.68E-111 | transposed | |
| Cme05g00950 | Cme-Chr5:13176826 | Cme05g01581 | Cme-Chr5:25027632 | 7.04E-118 | transposed | |
| Cme06g02677 | Cme-Chr6:33897738 | Cme05g01581 | Cme-Chr5:25027632 | 1.28E-90 | transposed | |
| Cme07g00239 | Cme-Chr7:1546464 | Cme05g01581 | Cme-Chr5:25027632 | 1.30E-87 | transposed | |
| Cme08g02161 | Cme-Chr8:27634172 | Cme05g01581 | Cme-Chr5:25027632 | 6.62E-96 | transposed | |
| Cme11g02045 | Cme-Chr11:28213585 | Cme05g01581 | Cme-Chr5:25027632 | 4.05E-148 | transposed | |
| Cme02g00044 | Cme-Chr2:416182 | Cme05g01581 | Cme-Chr5:25027632 | 1.32E-174 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme05g01581 | - | - | csv:101208725 | 747.658 |