Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01581 ATGGGGCATTTCTCCACCATGTTCAATGGGCTCGCAAGGTCATTTTCGTTCAAGAAAGGTAGAAATTCCGGAAGTCTCGATGACGGGGGAGGGCGAGAATCTGCAAAAGCCATGTTAAAGGATGCCAAAAGGAAAGACTCGATATTATGCACCTCCGGTGTCCTCAATTCAGAAGGTTCGGATACTTTTGCTTCAGTGTTTTCAAAGAAAGGCGAAAAAGGAGTAAACCAAGACTGCTGCATTGTATGGGAGGAATTTGGTTGCCAAGAAGACATGATATTCTGTGGGATTTTCGATGGGCATGGACCATGGGGTCATTTTGTTGCTAAGACGGTAAGAGAATCATTGCCACCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTTAGAAAAGAAGCATCAACGATATGATATATGGAAGCATTCTTATTTAAGAACTTGTGCTGCCATCGATCGCGAACTCGAGCAGCACCGTAAAATCGATACATTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTAGTCGTTTTGGCCAATGTAGGTGACTCCCGAGCAGTTTTAGCTACTACTTCAGATGATGGAAGTGTAGTAGCGGTTCAGCTCACAGTTGATTTCAAACCAAACCTACCTCAGGAGGCCGAACGGATAATTCAATGCAATGGGAGGGTGTTTTGTTTAAGTGACGAGCCAGGAGTTCATAGAGTTTGGCTTCCAAACGAGGAATCACCAGGATTGGCGATGTCGAGAGCCTTTGGTGATTATTGTATTAAAGACTTTGGACTCATTTCTGTGCCAGAAGTGACACATAGAAGTATAACAAGCAGAGACCAATTCATTATATTGGCCACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTGGAAATTGTATCGTCGACACCAGATAGAGCAAAAGCGTCAAAACGTCTGGTCGAGTGTGCAGTTCGGGCATGGAAGCGGAAGAGACGAGGCATTGCAATGGATGATATCTCAGCTATTTGCCTCTTCTTCCACTCCTCATCAGAGCAAGAACATCACCTTGTATCCCCACTATAG 1104 44.93 MGHFSTMFNGLARSFSFKKGRNSGSLDDGGGRESAKAMLKDAKRKDSILCTSGVLNSEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFLDPELDLEKKHQRYDIWKHSYLRTCAAIDRELEQHRKIDTFYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSVVAVQLTVDFKPNLPQEAERIIQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKDFGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPDRAKASKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSEQEHHLVSPL 367
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 25027632 25031246 - MELO3C004209.2.1 Cme05g01581 328644
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01581 367 SMART PP2C_4 52 351 IPR001932 -
Cme05g01581 367 PANTHER ALPHABET, ISOFORM E-RELATED 1 362 - -
Cme05g01581 367 CDD PP2Cc 63 353 IPR001932 -
Cme05g01581 367 Pfam Protein phosphatase 2C 86 331 IPR001932 -
Cme05g01581 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Cme05g01581 367 SUPERFAMILY PP2C-like 55 354 IPR036457 -
Cme05g01581 367 Gene3D - 50 356 IPR036457 -
Cme05g01581 367 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 362 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01581 Cme-Chr5:25027632 Cme02g01389 Cme-Chr2:20104680 2.87E-28 dispersed
Cme01g00348 Cme-Chr1:2586841 Cme05g01581 Cme-Chr5:25027632 5.87E-107 transposed
Cme03g00675 Cme-Chr3:11671461 Cme05g01581 Cme-Chr5:25027632 4.68E-111 transposed
Cme05g00950 Cme-Chr5:13176826 Cme05g01581 Cme-Chr5:25027632 7.04E-118 transposed
Cme06g02677 Cme-Chr6:33897738 Cme05g01581 Cme-Chr5:25027632 1.28E-90 transposed
Cme07g00239 Cme-Chr7:1546464 Cme05g01581 Cme-Chr5:25027632 1.30E-87 transposed
Cme08g02161 Cme-Chr8:27634172 Cme05g01581 Cme-Chr5:25027632 6.62E-96 transposed
Cme11g02045 Cme-Chr11:28213585 Cme05g01581 Cme-Chr5:25027632 4.05E-148 transposed
Cme02g00044 Cme-Chr2:416182 Cme05g01581 Cme-Chr5:25027632 1.32E-174 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01581 - - csv:101208725 747.658