Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01583 ATGTCGACGAAGAGATTGATTTCCAGTGGAACGACTCCGGAAACTGAGCCGCCGAGGTTGTTTGCTTCAGCCTTGCACTCGTTCCGGCAATGTGTAGAATCCGCTAGGGTTTTTGAGGAGCTTCCGATTGTTTCGATTGTATCGGTTTCACGGCCGGATACTGGAGATATTAGTCCCTTGCTGTTATCTTACACCATTGAAATCCAATACAAACAGTTTAAATGGAGGTTAGTGAAGAAAGCATCGCAAGTTCTATATTTACATTTTTCATTGAAGAGACGTGCATTTATTGAAGAACTCCACGAGAAACAAGAGCAGGTGAAAGAATGGCTTCACAACATGGGAATAGTTGACCATCCAGCTGTAGTTCATCATGATGACGAGTCTGATGATGGGGCCTTTTCTTTGCATGATGAACAAACTACAAGAAACAGGAACGTTCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCACTGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAAGGTTACTTAAATCACTTCTTTGGGAACTTGGATATTGTAAATTCTCGTGAGGTCTGCAAATTTTTAGAAGTCTCGAAGATGTCATTTGTAAGAGAACATGGTCCAAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTAAAACAAGTCACAGGATCTGATTCTAGTATAAAATGTTTTGCATGTCATTGGTGCAGTTGCTGCATGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCTATGGACTCTAAACTTCTAGATATAATTGTTTTTGATGTGCTACCAACAGTAGAAGAGGAGGGATCCCAAGCATGCTTAGCATATCATGTCAAGGAGCGGAATCCTTTACGTTATTCATTCAAGGTTAGGCGCGGTGATGGGGACATAAGGTTCAGAACCACAAGTACTGCCAAAGTCAGAGAATGGGTCTCATCAATTAATGATGCTGGTTTTGGAGCCAAAGATGGCTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCGCCTCAGAGAGGTTTGAGTGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGCTCTATTGAGGCTGCAAAATCTGAGATATTCATCACTGGCTGGTGGCTTTGCCCTGAGCTTTATACGCGACGTCCTTTTCATAATCATTCTTCATCACGGCTTGACGCGTTGCTGGAAACAAAAGCAAAAGAAGGTGTCAAGATCTACATCCTAATGTATAAGGAGGTTCCTATTGCTCTGAAAATTAACAGTATGTATAGCAAGAAGAGGCTTTTAAACATTCATGAGAATATTAAGGTATTACGTTCTCCTGATCATATGTCAACTGGGATTTATTATTGGTCACATCACGAAAAAATTGTCGTTGTTGATCACCAGATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGCCGGTATGATACAATGGAGCATAAAGTGAGTGACTTCCCTCCCTATACATGGCCGGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAAAGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCATGGCATGATGTTCACTGTGCTCTTTGGGGATCTCCATGCCGTGATGTTGCTCGACACTTTGTTCAGAGGTGGAACCATGCCAAGAGAAACAAAGCCCCAAATGAAGAAAAAATACCTTTACTTATGCCTCAACATGATATGGTCCTTCCACATTACATGGGAAAACGCACAGAGTTGAGCTTTAAAAATACAGACTCAGAGCAAGATCATCAGAAGCAGACCACGGATGATCTCTTTTCCTCCTTATCCCCACAGGATGATATTCCATTATTGATGCCTCAGGAAGCTGGTGGACTTCCAGATTCTAACGAGCAAACAAATAATCTTTCCATGCAGCACAATTCTTTCAATCAGCCCATGGAAATAGGAAAAAGTGTTACTGGTTCTTTCCAAGCATACAATGCTGAACCATTGACTCAAATTGAACAAACAAACGGATTATTAGATGACTTTGGATTTTTGGATGAATTTGGTGCTTTTGGTCATCTGAGGGAACCTACTTTTGATACTCCGCCATATATGAAAAATTCAAATGATTGGTTAGAAACTGAATGCGAAAGTAACCATGTTGCTATAAACGAGGTCAGCGAAATTGGTCCCCTTACTAGTAGCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACAAGCAAACCAGAAGCAAGTATTCATGCTGCTTATTGTGCTGCCATTCAAGAGGCAAAACACTTCATCTACATTGAGAACCAGTTTTTCATATCTGGTTTATCAGGGGATGAGACCATACAAAATCGGGTTCTGGATGCATTATACCAACGTATATGGCTGGCTCATAAAGAAAAACAATGTTTTCGAGTTATTGTTGTTTTACCACTCTTACCTGGATTTCAGGGTGGTGTAGATGATAATGGTGCAGCAACTGTTCGAGCCTTGATGCATTGGCAGTACCGAACAATTAGTTGGGAAAAAACTTCGATACTGTACCGTCTCAATCTATTATTGGGTCCTAAAACGCAAGATTATATTTTATTTTGTGGCCTTCGATCATATGGCAGACTATTTGATGGTGGTCCAATTGCTACAAGTCAGATATATGTGCACAGCAAATTGATGATAATCGATGATTGTATTACCTTTATTGGTTCCTCCAATATTAATGATAGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGAGTAATTATTGAGGATAAAGAGTTTGTTGTTTCATCTATGAATGGAAAACCTTGGAAAGCTGGAAAGTTCGCTCATAGTCTACGATGTTCCTTGTGGTGTGAGCACCTCGGTCTTCATCTCGGAGAGGTCAGTCAAATCCTTGATCCAGTTGTAGAAGCAACGTACAAAGATTTGTGGTTAGCTACGGCAAAGGAAAATACGACAATATATGAAGAAGTCTTTTCTTGCATCCCCAATGACAACATAAACTCAAGATTGTCTCTACGCCAAAGTTTGGCGGATTTGAAGGTGAAACTTGATCATAACACACTAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGCCATGAAAATGGGGAAGTAAAAATGATAGATTCAATGGAGAGATTGAAGTGTATTAGGGGACATCTAGTTTGTTTTCCTTTGAAGTTCTTGTGGCAAGAAGATCTCAGGCCCGGGTTCATTGAGAGTGAGTTTTATGCTGCTCCTCATGTTTTTCATTGA 3330 41.05 MSTKRLISSGTTPETEPPRLFASALHSFRQCVESARVFEELPIVSIVSVSRPDTGDISPLLLSYTIEIQYKQFKWRLVKKASQVLYLHFSLKRRAFIEELHEKQEQVKEWLHNMGIVDHPAVVHHDDESDDGAFSLHDEQTTRNRNVPSVAALPIIKPALGGQRSISDKAKLAMQGYLNHFFGNLDIVNSREVCKFLEVSKMSFVREHGPKLKEGYLMVKHLKQVTGSDSSIKCFACHWCSCCMYNWKKVWAVLKPGFLALVADPMDSKLLDIIVFDVLPTVEEEGSQACLAYHVKERNPLRYSFKVRRGDGDIRFRTTSTAKVREWVSSINDAGFGAKDGWCHPHRFGSFAPQRGLSDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYTRRPFHNHSSSRLDALLETKAKEGVKIYILMYKEVPIALKINSMYSKKRLLNIHENIKVLRSPDHMSTGIYYWSHHEKIVVVDHQICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDVARHFVQRWNHAKRNKAPNEEKIPLLMPQHDMVLPHYMGKRTELSFKNTDSEQDHQKQTTDDLFSSLSPQDDIPLLMPQEAGGLPDSNEQTNNLSMQHNSFNQPMEIGKSVTGSFQAYNAEPLTQIEQTNGLLDDFGFLDEFGAFGHLREPTFDTPPYMKNSNDWLETECESNHVAINEVSEIGPLTSSNCQVIRSVSQWSAGTSKPEASIHAAYCAAIQEAKHFIYIENQFFISGLSGDETIQNRVLDALYQRIWLAHKEKQCFRVIVVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGPKTQDYILFCGLRSYGRLFDGGPIATSQIYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVVSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQILDPVVEATYKDLWLATAKENTTIYEEVFSCIPNDNINSRLSLRQSLADLKVKLDHNTLDLGIAAEKIESHENGEVKMIDSMERLKCIRGHLVCFPLKFLWQEDLRPGFIESEFYAAPHVFH 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25048067 25057360 - MELO3C004211.2.1 Cme05g01583 328646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01583 1109 Gene3D - 200 336 IPR011993 -
Cme05g01583 1109 SUPERFAMILY Phospholipase D/nuclease 747 953 - -
Cme05g01583 1109 PANTHER PHOSPHOLIPASE D ZETA 2 26 1106 - -
Cme05g01583 1109 Pfam PLD-like domain 778 951 IPR025202 -
Cme05g01583 1109 SMART PH_update 211 338 IPR001849 -
Cme05g01583 1109 PANTHER PHOSPHOLIPASE D 26 1106 IPR015679 -
Cme05g01583 1109 MobiDBLite consensus disorder prediction 609 650 - -
Cme05g01583 1109 Pfam Phospholipase D Active site motif 473 498 IPR001736 GO:0003824
Cme05g01583 1109 SMART pld_4 471 498 IPR001736 GO:0003824
Cme05g01583 1109 SMART pld_4 905 932 IPR001736 GO:0003824
Cme05g01583 1109 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 905 932 IPR001736 GO:0003824
Cme05g01583 1109 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 471 498 IPR001736 GO:0003824
Cme05g01583 1109 SUPERFAMILY Phospholipase D/nuclease 341 591 - -
Cme05g01583 1109 CDD PH_PLD 188 334 - -
Cme05g01583 1109 PIRSF PLD_euk 714 1109 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cme05g01583 1109 PIRSF PLD_euk 53 627 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cme05g01583 1109 Gene3D Endonuclease Chain A 728 965 - -
Cme05g01583 1109 CDD PLDc_vPLD1_2_yPLD_like_1 364 508 - -
Cme05g01583 1109 ProSiteProfiles PH domain profile. 210 336 IPR001849 -
Cme05g01583 1109 SUPERFAMILY PH domain-like 208 340 - -
Cme05g01583 1109 CDD PLDc_vPLD1_2_yPLD_like_2 765 949 - -
Cme05g01583 1109 Gene3D Endonuclease Chain A 356 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01583 Cme-Chr5:25048067 Cme11g02046 Cme-Chr11:28223054 0 dispersed
Cme05g01583 Cme-Chr5:25048067 Cme03g01617 Cme-Chr3:25062581 8.87E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01583 K01115 - csv:101220522 2219.89