Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme05g01657 | ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTCTTTCGTCCTCCTCTCGACAACGATGATTCCCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATCAACTCCAGCATCCGCAAATCCAGAGTTTTCTCTAGACACTCCCCTTCCTCTTCCTCTCTCCCTCCCATTCCTAAAGACACCGACCCTCCCATTCGATGGCGCAAAGGCGAATTGATTGGCTGTGGCGCCTTTGGTCGCGTTTATATGGGCATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTTTGATTGCTGCTAATGGTGCTTCGAAGGAGAAAGCGCAGGCCCAAGTTCAGGAGCTTGAGGAAGAAGTGAAACTTCTGAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGCACAGTCAGAGAGGACGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATAGCATCACTTCTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAATGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGACAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACCGGTCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACCTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGGACAACGAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCAACTGCCTCTGAACTCTTGAAGCATCCTTTTGTTACTGGGGAGGAGGCCCAATCTCAACTTCTGTCACGTGATGCATGCACGGAGCCCTTGAAAATCTATTCACCACAATGTACTTCAGAACTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGCAATTTGGATAGTTTGAGCTGCTCAAAGGTATACTCTACAAACAAACTAGAAAGTGATATGTGGGGAAGAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAAATTGGCTCTTCTATTATACATGAGAATATGAAGAGTTATAATCCAATTTGTGAGCCCTCTGATGATGAGGATTGCCAATTTGATAGAAGTCCAGTAGTAGACCAAGGAAGCAGTTTACATGAAGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGCTTTCGACGAGGAACAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTTTATGAGGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATTGAGAGCAAACAAGATGAAAGTACTCCTAAATACTTGAAATTGCCCCCGAAAAGCCGGTCGCCAAGTCGAAGTCCTGGTAACCCATCCCCAGCACATGATGCTTTTGGCACTGGTAGCCCAGGGAGTGGTAGCAGGGGTAATGCAAATGATCAAAGGTCACAACTCAATGATTGGAAAGGACTTCATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGAATTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTCGAGAGAAAACGAGAGATGATGCGTCAAGCTGGCGTGGGAGGTAAAACTTCATCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGGACACGGGATGATGTGTCGGGTGCTGGGAGGGACAACAGGGAAAACTTCATCTCCTGA | 2019 | 43.93 | MQDIFASVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSSLPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAQVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSIASLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPTASELLKHPFVTGEEAQSQLLSRDACTEPLKIYSPQCTSELEMSKTPTHPGSSDICNLDSLSCSKVYSTNKLESDMWGRNSDDEMCQIDDKDDFMLDEVKIGSSIIHENMKSYNPICEPSDDEDCQFDRSPVVDQGSSLHEEALAPGSCSGAFDEEQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPAHDAFGTGSPGSGSRGNANDQRSQLNDWKGLHGQSEAGSPSKNYSEIQRKWKEELDQELERKREMMRQAGVGGKTSSPKDKAMGRPRERTRDDVSGAGRDNRENFIS | 672 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 25692530 | 25697740 | - | MELO3C004269.2.1 | Cme05g01657 | 328720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme05g01657 | 672 | MobiDBLite | consensus disorder prediction | 45 | 64 | - | - | |
Cme05g01657 | 672 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524 | |
Cme05g01657 | 672 | MobiDBLite | consensus disorder prediction | 537 | 672 | - | - | |
Cme05g01657 | 672 | Gene3D | Transferase(Phosphotransferase) domain 1 | 69 | 364 | - | - | |
Cme05g01657 | 672 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 371 | IPR011009 | - | |
Cme05g01657 | 672 | MobiDBLite | consensus disorder prediction | 575 | 610 | - | - | |
Cme05g01657 | 672 | Coils | Coil | 103 | 130 | - | - | |
Cme05g01657 | 672 | MobiDBLite | consensus disorder prediction | 611 | 633 | - | - | |
Cme05g01657 | 672 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 590 | - | - | |
Cme05g01657 | 672 | MobiDBLite | consensus disorder prediction | 645 | 672 | - | - | |
Cme05g01657 | 672 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 | 1 | 590 | - | - | |
Cme05g01657 | 672 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 194 | 206 | IPR008271 | GO:0004672|GO:0006468 | |
Cme05g01657 | 672 | SMART | serkin_6 | 70 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01657 | 672 | Coils | Coil | 613 | 633 | - | - | |
Cme05g01657 | 672 | CDD | STKc_MAPKKK | 69 | 332 | - | - | |
Cme05g01657 | 672 | ProSiteProfiles | Protein kinase domain profile. | 70 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme05g01657 | 672 | Pfam | Protein kinase domain | 71 | 332 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g00263 | Cme-Chr5:1916073 | Cme05g01657 | Cme-Chr5:25692530 | 0 | dispersed | |
Cme05g01657 | Cme-Chr5:25692530 | Cme08g01088 | Cme-Chr8:7195247 | 2.55E-88 | dispersed | |
Cme06g00521 | Cme-Chr6:3294460 | Cme05g01657 | Cme-Chr5:25692530 | 1.06E-42 | dispersed | |
Cme12g00064 | Cme-Chr12:620766 | Cme05g01657 | Cme-Chr5:25692530 | 2.11E-48 | dispersed | |
Cme05g01657 | Cme-Chr5:25692530 | Cme08g00551 | Cme-Chr8:3459611 | 9.22E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64900 | PF00069 | Pkinase | 2.20E-72 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme05g01657 | K20606 | - | csv:101209358 | 1242.64 |