Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01657 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTCTTTCGTCCTCCTCTCGACAACGATGATTCCCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATCAACTCCAGCATCCGCAAATCCAGAGTTTTCTCTAGACACTCCCCTTCCTCTTCCTCTCTCCCTCCCATTCCTAAAGACACCGACCCTCCCATTCGATGGCGCAAAGGCGAATTGATTGGCTGTGGCGCCTTTGGTCGCGTTTATATGGGCATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTTTGATTGCTGCTAATGGTGCTTCGAAGGAGAAAGCGCAGGCCCAAGTTCAGGAGCTTGAGGAAGAAGTGAAACTTCTGAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGCACAGTCAGAGAGGACGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATAGCATCACTTCTGGGGAAATTTGGAGCCTTCCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAATGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGACAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACCGGTCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACCTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGGACAACGAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCAACTGCCTCTGAACTCTTGAAGCATCCTTTTGTTACTGGGGAGGAGGCCCAATCTCAACTTCTGTCACGTGATGCATGCACGGAGCCCTTGAAAATCTATTCACCACAATGTACTTCAGAACTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGCAATTTGGATAGTTTGAGCTGCTCAAAGGTATACTCTACAAACAAACTAGAAAGTGATATGTGGGGAAGAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTTATGTTAGATGAAGTAAAAATTGGCTCTTCTATTATACATGAGAATATGAAGAGTTATAATCCAATTTGTGAGCCCTCTGATGATGAGGATTGCCAATTTGATAGAAGTCCAGTAGTAGACCAAGGAAGCAGTTTACATGAAGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGCTTTCGACGAGGAACAAAACTTCTCATTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAAAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTTTATGAGGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATTGAGAGCAAACAAGATGAAAGTACTCCTAAATACTTGAAATTGCCCCCGAAAAGCCGGTCGCCAAGTCGAAGTCCTGGTAACCCATCCCCAGCACATGATGCTTTTGGCACTGGTAGCCCAGGGAGTGGTAGCAGGGGTAATGCAAATGATCAAAGGTCACAACTCAATGATTGGAAAGGACTTCATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGAATTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTCGAGAGAAAACGAGAGATGATGCGTCAAGCTGGCGTGGGAGGTAAAACTTCATCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGGACACGGGATGATGTGTCGGGTGCTGGGAGGGACAACAGGGAAAACTTCATCTCCTGA 2019 43.93 MQDIFASVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSSLPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAQVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSIASLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPTASELLKHPFVTGEEAQSQLLSRDACTEPLKIYSPQCTSELEMSKTPTHPGSSDICNLDSLSCSKVYSTNKLESDMWGRNSDDEMCQIDDKDDFMLDEVKIGSSIIHENMKSYNPICEPSDDEDCQFDRSPVVDQGSSLHEEALAPGSCSGAFDEEQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLNASCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPAHDAFGTGSPGSGSRGNANDQRSQLNDWKGLHGQSEAGSPSKNYSEIQRKWKEELDQELERKREMMRQAGVGGKTSSPKDKAMGRPRERTRDDVSGAGRDNRENFIS 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25692530 25697740 - MELO3C004269.2.1 Cme05g01657 328720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01657 672 MobiDBLite consensus disorder prediction 45 64 - -
Cme05g01657 672 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Cme05g01657 672 MobiDBLite consensus disorder prediction 537 672 - -
Cme05g01657 672 Gene3D Transferase(Phosphotransferase) domain 1 69 364 - -
Cme05g01657 672 SUPERFAMILY Protein kinase-like (PK-like) 69 371 IPR011009 -
Cme05g01657 672 MobiDBLite consensus disorder prediction 575 610 - -
Cme05g01657 672 Coils Coil 103 130 - -
Cme05g01657 672 MobiDBLite consensus disorder prediction 611 633 - -
Cme05g01657 672 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 590 - -
Cme05g01657 672 MobiDBLite consensus disorder prediction 645 672 - -
Cme05g01657 672 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 590 - -
Cme05g01657 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cme05g01657 672 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01657 672 Coils Coil 613 633 - -
Cme05g01657 672 CDD STKc_MAPKKK 69 332 - -
Cme05g01657 672 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g01657 672 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00263 Cme-Chr5:1916073 Cme05g01657 Cme-Chr5:25692530 0 dispersed
Cme05g01657 Cme-Chr5:25692530 Cme08g01088 Cme-Chr8:7195247 2.55E-88 dispersed
Cme06g00521 Cme-Chr6:3294460 Cme05g01657 Cme-Chr5:25692530 1.06E-42 dispersed
Cme12g00064 Cme-Chr12:620766 Cme05g01657 Cme-Chr5:25692530 2.11E-48 dispersed
Cme05g01657 Cme-Chr5:25692530 Cme08g00551 Cme-Chr8:3459611 9.22E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64900 PF00069 Pkinase 2.20E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01657 K20606 - csv:101209358 1242.64