Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01680 ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTATGTTACAATGGAAGCAAAGATCTTTACTCTTTACTTGGAGGAGGAATTTGGGCTAATGGAAGCTTTGAATATCCAGAAATCCCTCATGATTTTCCCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCATCTTCTTCTGTTTTTGTTCCTAACCCTTCCCCTGAAGCTGCTGATTCCAGAAATGGGTTGCTGAAACCGCCATTAGAGGCTGAATCAATTACTCCACACCCAATTCGTCCAAGGAAACGAAGACCCAAATCACGCAAGAACAAAGAGGAAATCGAAAATCAAAGAATGACTCACATCGCTGTTGAACGAAATCGCAGAAAACAAATGAATGAATATCTCTCTGTTCTTCGTTCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCAATTAATTTTGTGAAGGAGTTAGAACAACAAGTTCAAGTTCTATCCACAATAGAAACAAAAGGGAAAATTAATAATTCTGCTGAAGGGTGTTGTAATTCGAATTCAAATTCAAATTCAAAGATTCCTTTCGCAGAGTTCTTCAGTTTCCCTCAATTCAAAGCAATGGAAGGTTGTTCTTTAGTGAGTGAAAATGAGACTCAATGTTCTTCCACCGTTGCTGATATTGAAGTAACAATGGTAGAAAATCATGCAAATTTGAAAATAAGATCAAAGAGAAGACCAAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTTTCTGTTCTTCATCTCAATATTTCAACTATCAACCAAATTGTTCTTTATTGTCTCAGTGTCAAGGTCGAAGATGATTGCAAGCTGAGTTCTGTTGATGAAATTGCTTCTGCCCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCACTTATGAACTGA 954 37.53 MALEAVVFSQDPLCYNGSKDLYSLLGGGIWANGSFEYPEIPHDFPENQTENFPFEDWNSSSSVFVPNPSPEAADSRNGLLKPPLEAESITPHPIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTIETKGKINNSAEGCCNSNSNSNSKIPFAEFFSFPQFKAMEGCSLVSENETQCSSTVADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIVLYCLSVKVEDDCKLSSVDEIASALHQLLSRIEEDSLMN 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25832469 25834782 + MELO3C004287.2.1 Cme05g01680 328743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01680 317 Gene3D - 106 175 IPR036638 GO:0046983
Cme05g01680 317 PANTHER MAX DIMERIZATION, MAD 1 317 - -
Cme05g01680 317 SMART finulus 118 169 IPR011598 GO:0046983
Cme05g01680 317 MobiDBLite consensus disorder prediction 66 109 - -
Cme05g01680 317 Pfam Helix-loop-helix DNA-binding domain 113 164 IPR011598 GO:0046983
Cme05g01680 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Cme05g01680 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 173 IPR036638 GO:0046983
Cme05g01680 317 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 317 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00114 Cme05g01680 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00114 Cme-Chr2:871147 Cme05g01680 Cme-Chr5:25832469 1.46E-76 dispersed
Cme03g01839 Cme-Chr3:26743253 Cme05g01680 Cme-Chr5:25832469 1.22E-71 dispersed
Cme04g00128 Cme-Chr4:971493 Cme05g01680 Cme-Chr5:25832469 1.56E-59 dispersed
Cme05g01680 Cme-Chr5:25832469 Cme06g00385 Cme-Chr6:2420541 3.61E-53 dispersed
Cme05g01680 Cme-Chr5:25832469 Cme06g02473 Cme-Chr6:31713059 9.67E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41369 PF00010 HLH 7.80E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01680 - - csv:101212782 574.704