Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01737 ATGATGAAGCTGCAAACATATGCGGGGATTAGTTTTATTGCAACCATAATGGTTATCTATCATGCCTTCAACAGTAGAGGGCAGTTCTACCCAGCATTGGTCTATTTATCGACCTCCAAGATAAATCTAGTACTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTGGGTTCTCTTAGAGAAGCAGAAGTGGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTATTTGCCATCACTATTTTTCGGCAAGATTTTTCTGTTGCATTCCTGGGTATGGTCACGGCTCTGTTGTTGATCAAAGCTCTCCATTGGCTGGCTCAGAAGAGAGTTGAATACATGGAAACCACTCCATCGGTGCCATTGTTGTCTCATATCCGGATTGTTTCTTTCTTAGGCTTCCTCTTTGTTCTCGATAGTCTGTTTTTTTATAACTCGATAGATTCTCTGATACAGACAAGGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACAGCTGTGTCAACGTTTGTGAAATATATCTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAACCAGTCTATACATTTTACTTGGAACTTATTCGAGACTTACTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTTTATGAGATCTTTAGGAATTTCAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAATGATCGTTTTCCTGATGCAACGCCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGTCTCCGATCTTGGTTGGAGCGACAACATACTTGTCCCACTTGTAGAGCCCTTGTTGTACCACCCGAAGGTTCAAGTACAACAAGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACCACAAGTTCATCTGCACAAGGTACAAGTGGCACAGGCGTTACTAACGCTAATTTAAGTCATCATCAGGCTAGAGTTCGAGCTGCTGCCGCTGCTGCTTCAATATATGAGAAATCGTATGTTTATCCTTGTGCGAGCACATTAGTATGGTCTCTTGGATATGCAGTAGTTCCTCAAGTTGAAAGACCTTTGTTTGACTCTAACAATACAGAAACAAATGGAGAGCAATCTCCCAATGGACATCCACAGTACTTTTCATTTCCTGGCGGCCCTTCAAACCTGTCCTTCACTCAATTTCCCCAAAATATCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATATAGAGGAATTGGGGAGTAGTCTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAAATTTCTTCAACAACAGATTGAGTTCCTTCAGAATCAACTGCAACTTCTCCGTAAACCAAAAGTTGAGGAAAGCTCAAGAGGAGCTAGCGAGACAGATAAGAAAGGGAAAAGTTTAGCTATCTCACCATCGCCATCGGCGTCATTGTCTTCATCAGATTCTCATCCACCTGGAGAAACGGAAAGGGTGGTAAGATAG 1677 41.62 MMKLQTYAGISFIATIMVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIDSLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTTSGHHGVQSDANQQGTGTTSSSAQGTSGTGVTNANLSHHQARVRAAAAAASIYEKSYVYPCASTLVWSLGYAVVPQVERPLFDSNNTETNGEQSPNGHPQYFSFPGGPSNLSFTQFPQNIFVPFQPREGTGNNIEELGSSLNVSGSQLEAQEKFLQQQIEFLQNQLQLLRKPKVEESSRGASETDKKGKSLAISPSPSASLSSSDSHPPGETERVVR 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26394592 26402642 - MELO3C004334.2.1 Cme05g01737 328800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01737 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Cme05g01737 558 SMART ring_2 292 329 IPR001841 -
Cme05g01737 558 MobiDBLite consensus disorder prediction 424 449 - -
Cme05g01737 558 PANTHER RING ZINC FINGER PROTEIN 1 458 - -
Cme05g01737 558 SUPERFAMILY RING/U-box 272 336 - -
Cme05g01737 558 Pfam Ring finger domain 291 330 IPR001841 -
Cme05g01737 558 MobiDBLite consensus disorder prediction 513 527 - -
Cme05g01737 558 Coils Coil 486 506 - -
Cme05g01737 558 MobiDBLite consensus disorder prediction 340 374 - -
Cme05g01737 558 MobiDBLite consensus disorder prediction 530 550 - -
Cme05g01737 558 CDD RING-H2_synoviolin 289 330 - -
Cme05g01737 558 PANTHER - 1 458 - -
Cme05g01737 558 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Cme05g01737 558 MobiDBLite consensus disorder prediction 512 558 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00430 Cme-Chr5:3741308 Cme05g01737 Cme-Chr5:26394592 8.75E-26 dispersed
Cme05g01737 Cme-Chr5:26394592 Cme10g01277 Cme-Chr10:13660314 9.85E-12 dispersed
Cme05g01737 Cme-Chr5:26394592 Cme03g01838 Cme-Chr3:26724285 1.15E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01737 K10601 - csv:101215351 1047.34