Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01739 ATGTTGAGATTCCATGTGGGCGGGAAGGTGGTCGAGAGAGTTGATTTGTTGAGGAAGAAACACTGGGCGTGGCGATTCGATCTGTGGCCATTTGCCATTCTTTATGCCGCCTGGCTTGCCGTTGTTGTTCCCAGTATAGACTTTGGAGATGCTCTTATTGTTTTGGGTGGACTTGCGGCTCTTCATATTCTGGTCTTGCTATTCACTGCTTGGTCTGTTGATTTCAAATGTTTTGTTCAGTACAGTCAGGTTAATGATATTTACTCTGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGATCAAAAGAAATTGTTTCGCTTCATTTTCGTAAGCTTCTGGCGGGTTCTACGTCTGCAGTTGATCTCGAGGAGATCTACTTTGATTTCAGAAAACAACGATTTATTTATTCAAAGGAGAAGGAGACTTTCTGCAAGCTTCCTTACCCAACAAAAGAAACATTTGGTTATTATCTAAAGAATACTGGTTATGGCTCTGAGCCTAAAGTTGTAGCTGCTGTTGAAAAATGGGGGCGCAATATATTTGAGTATCCACAACCTACGTTTCAGAAATTAATGAAGGAGCAGTGCATGGAACCATTTTTTGTATTTCAGGTTTTTTGTGTGGGACTATGGTGTTTGGATGAGTATTGGTATTACAGCCTGTTTACTCTATTTATGCTGTTCATGTTTGAGTCAACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTGAGACGTGTCAGAGTGGATACTCAGACCATAATGGTGCATCGTTCTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCAGGAGATGTTGTCTCCATAGGGCGTGATTCTGGTCAGAGTGGTGACGATAAATCTGTACCTGCTGATATGCTAATCTTGGCTGGAAGTGCTATTGTTAATGAAGCCATTCTTACTGGGGAGTCTACTCCACAATGGAAGGTTTCAATAACTGGGAGAGGAATTGATGAGAAGTTATCAGCTAAGAGAGACAAAAGTCATGTGTTATTTGGTGGGACCAAAATACTACAGCATACTCCGGATAAGACCTTTCCTCTTAGAACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGCGAACTGGATTTGAAACAAGTCAAGGGAAACTAATGCGCACAATTTTGTTTTCTACGGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCCTATTTATTATGTTCTTAGTTGTATTTGCAGTTATAGCTGCTGGTTATGTACTTGTAAAGGGGTTGGAAGATCCCACGAGAAGCAAGTACAAGCTTTTCCTCAGTTGCTCACTTATAATCACTTCTGTTATTCCTCCTGAACTACCAATGGAACTGTCAATAGCAGTTAATACATCGTTAATTGCTCTAGCACGTCGTGGAATATTTTGTACAGAGCCTTTCCGAATACCGTTTGCTGGGAAGGTTGATATTTGTTGTTTCGATAAAACTGGAACATTGACATCAGATGACATGGAGTTTCGAGGAGTAGTTGGTTTGAGCGATAAGGAGGAATTGGAAACTGACATGACTAGTGTGTCTTTGCGCACAGTTGAAATTCTGGCTTCTTGCCATGCATTGGTGTTTGTGGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCTCTCAAGGGAGTTGATTGGATTTACAAATCTGATGAGAAAGCCATTCCCAGAAAGGGAAGTGGCCACGCAGTCCAGATCGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCCGAAACCATCCAGGAGAGGCTCACTGATGTACCTTCATTTTATGTTGAGACTTATAAGAAATATACACGACAAGGTTCCCGTGTCCTTGCTCTTGCTTACAAATCACTTCCTGACATGACAGTTAGTGAAGCACGAGGCCTGGATAGAGACTTGGTGGAGAGTGACCTGACATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCAGACTCAGCTACAATATTATCCGAGCTTAAAGGATCATCTCATGACTTGGTCATGATTACTGGTGACCAAGCATTAACAGCGTGCCACGTAGCTAGCCAAGTTCATATTACCTCAAAGCAAATTTTAATTCTCAATTCAATGAAGGGGACTGAGGAATATAAATGGCTTTCCCCTGATGAGTCACAGACAGTTCCCTACAGTGAGAAAGAGGTGGGAACTTTATCAGAGACATATGATCTTTGTATTGGAGGTGACTGCATCGCGATGCTACAACGCACCTCCACTGTGCTGGATGTTATTCCATATGTTAAGGTTTTTGCAAGAGTTGCTCCTGAGCAGAAAGAACTCATTTTGACCACTTTCAAAACTGTCGGAAGAATGACATTAATGTGTGGGGATGGTACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAATTGCTCTCCTAAACGCAGTCCCTCCTCCTCAAAGTGGTAACTCTTCTTCAGAAGCATCCAAAGATGAGGCTGTAAGGTCTGGAAAGTCCAAGAAATCTAAGCCTTCATCCGAATCATCAGGAAAAGCACTTGTTAGTGGAGAAGGTTCTTCAAAAAGCAAAGTTGGTGCAAAACTGGATTCTGCTGCTGAGCAAGCTAGCAACCGTCCACGGACACCTGCAGAAATGCAAAGACAGAAGCTAAAGAAACTTATGGATGAGTTAAACGAAGAGGGAGATGGGCGCTCTGCCCCTGTTGTGAAGCTTGGAGATGCATCCATGGCATCACCATTCACCGCAAAGCATGCTTCTGTTGCCCCTACTACTGACATTATTCGCCAAGGTCGAAGTACTCTGGTGACAACACTGCAAATGTTTAAAATTCTTGGTCTCAACTGCCTCGCTACTGCCTACGTACTGAGTGTAATGTATTTGGATGGTGTAAAGCTCGGCGATATTCAAGCCACTATCAGTGGCGTATTCACAGCAGCCTTTTTTCTCTTCATCTCACATGCGCGGCCCCTTCCGACACTCTCAGCCGAACGCCCCCATCCACATGTCTTTTGCACTTATGTTCTCCTTTCTTTGTTGGGCCAATTTGCAATCCACTTATGTTTCTTGATTTCTTCGGTGAAAGAAGCTGAAAAGCATATGCCCGATGAATGTATAGAGCCTGACTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCATACATGGTAAGCATGATGCTTCAGGTGGCAACCTTTGCCGTAAACTACATGGGTCATCCCTTTAACCAGAGTGTATCCGAAAACAAGCCGTTCTTGTACGCCCTCTTGGCTGCAGTTGGTTTTTTCACCGTTATTACCTCTGATTTGTTTAGAGATCTCAATGACTGGCTGAAACTTGTTCCATTGCCTGCGGGAATGAGGGATAAGCTTCTGGCTTGGGCACTTCTCATGTTCTTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATTTATGTTCCCGGGTAAAATTCCAGCATGGCGGAAGCGACAACGGCTGGTGGCTGCTAATCTGGAGAAGAAGAAACAGGTCTGA 3579 43.7 MLRFHVGGKVVERVDLLRKKHWAWRFDLWPFAILYAAWLAVVVPSIDFGDALIVLGGLAALHILVLLFTAWSVDFKCFVQYSQVNDIYSADTCKIVPAKFSGSKEIVSLHFRKLLAGSTSAVDLEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGYYLKNTGYGSEPKVVAAVEKWGRNIFEYPQPTFQKLMKEQCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTIMVHRSGKWVKLPGTELLPGDVVSIGRDSGQSGDDKSVPADMLILAGSAIVNEAILTGESTPQWKVSITGRGIDEKLSAKRDKSHVLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFIMFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGLSDKEELETDMTSVSLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWIYKSDEKAIPRKGSGHAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDVPSFYVETYKKYTRQGSRVLALAYKSLPDMTVSEARGLDRDLVESDLTFAGFAVFNCPIRADSATILSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSMKGTEEYKWLSPDESQTVPYSEKEVGTLSETYDLCIGGDCIAMLQRTSTVLDVIPYVKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGNSSSEASKDEAVRSGKSKKSKPSSESSGKALVSGEGSSKSKVGAKLDSAAEQASNRPRTPAEMQRQKLKKLMDELNEEGDGRSAPVVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHVFCTYVLLSLLGQFAIHLCFLISSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPAGMRDKLLAWALLMFLCCYSWERLLRFMFPGKIPAWRKRQRLVAANLEKKKQV 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26408350 26423843 - MELO3C004336.2.1 Cme05g01739 328802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01739 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Cme05g01739 1192 Gene3D - 483 668 IPR023299 GO:0000166
Cme05g01739 1192 SFLD C1.7: P-type atpase like 469 955 - -
Cme05g01739 1192 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1186 - -
Cme05g01739 1192 Pfam E1-E2 ATPase 256 468 - -
Cme05g01739 1192 Pfam Cation transport ATPase (P-type) 540 617 - -
Cme05g01739 1192 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 42 1149 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Cme05g01739 1192 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Cme05g01739 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1169 IPR023298 -
Cme05g01739 1192 PANTHER CATION-TRANSPORTING ATPASE 1 1186 - -
Cme05g01739 1192 MobiDBLite consensus disorder prediction 847 861 - -
Cme05g01739 1192 Gene3D - 669 845 IPR023214 -
Cme05g01739 1192 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Cme05g01739 1192 Coils Coil 896 916 - -
Cme05g01739 1192 SFLD p-type atpase 469 955 IPR044492 -
Cme05g01739 1192 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Cme05g01739 1192 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Cme05g01739 1192 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Cme05g01739 1192 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Cme05g01739 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Cme05g01739 1192 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 401 517 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01739 1192 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 828 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme05g01739 1192 MobiDBLite consensus disorder prediction 830 903 - -
Cme05g01739 1192 CDD P-type_ATPase_cation 170 1107 - -
Cme05g01739 1192 Gene3D - 224 388 - -
Cme05g01739 1192 SUPERFAMILY HAD-like 483 834 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01739 Cme-Chr5:26408350 Cme05g01776 Cme-Chr5:26749671 2.32E-17 dispersed
Cme05g01739 Cme-Chr5:26408350 Cme08g00653 Cme-Chr8:4271327 1.03E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01739 K14950 - csv:101215828 2322.35