Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01747 ATGGGTGCTCAGAGAAAGGGAGCATCGCGGGTTTCCGACGACCATGAGGAGCTGGCACGAGTTTCATTGCAGGCTGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGCCCCATAACGCTTGAACGCCCCAAGGTATTGTTGCCGCTGGTAAATGTCCCGATGATTAATTATACCTTATCCTGGCTTGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTATTTAGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCAGAACTATAGAGTCGCACAACTCCATTAGTGCTGGAGATGCCCTTCGTCTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACAATAAGCAACATGTCACTTACACAAGCTCTTCAAGAACATAAAGAGAGAAAGAAGAAAGATAGTAATGCCGTAATGACAATGGTTGTCAAAAGGTCAAAGCCTTCTCCTATCACACACCAATCTCGGCTTGGCACTGATGAACTATTCATGGCAATTGATCACAATACCAAGCAGCTCGTGTACTATGAGGACAAAGTTGACTATGCAAAAGGAATTATACATCTTGACAAGTCATTGATAATGGATAATTCTTCCATATCACTTCATAACGACATGCAGGACTGTTATATAGATATCTGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTACGTCGTCATTTTGTCAAGGGCTTGCTTTTAGATGATATCATGGGTTACAAGATTTACACATATGAAATTTGCTCAAGCTATGCAGCAAGAATTGATAACTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCCGATGTTAAATTCTTTGGGAACTCTACTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGCTCTGCCCAGGTTGGTCCATTTACTGTTATTGGAGATAACAGCAAAATTGGTGACAACACCAAAATTACCAATTCAATTATTGGGCATGGTTGTAGTATTGGATCAAATGTTAAAATTGAAGGCTCTTATATATGGGACAATGTGACCATTGAAGATGGTTGTAAACTCAGTCATGCTATTGTATGTGATGGAGTTGTTATAAAGTCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAGTTTACTGTTCCATCATATTCAAAGGTATCTTTGTTTGAGCAGCCAACCAATCAAGATAGCGATGAGGAGCTGGAATACGCAGATAATAGCAGTGGCATTGTAGAATTTGCAGATACAACAGACAAGTCAAATAGTGCACTGATGTCCAAATCACTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGGAAGGGAGGTCTAGGTTATGTTTGGTCAATTTGTGAAGGAAGTGTCGAAGAAGAATGGAGGCATTCAGTTGCACCCATTCCTGCTGATAAACTTGAGAAGGTTCTGCATAAAGCACCAGATGACGAGGTGGAGTTAACTCAAGATGCTAATGTTTTACCACCTTCAGGGGAGTTGAAGTCTGACTCATATATCTCAGATGGTGATGATAATGAAAGCTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTTGAAGCAACGTTTCTGAGGGCTGTGCATGAAAATATTGAAGTAGCCAATGTAATTTTGGAAGTAAACTCATTGCGGTTGTCATTTAATAAGGTGGCTTCAGATTGCGCAGGAGCAATATTTTATTCTCTGATGAACTTTGCCTTAGATTCTTCACGTGGTTCATCAGGTGAACTGCTGAAAAATACTACAAGTATAATTACAAAATGGAAAAAACTTTTGAAGTACTACCTAACTGACTTGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATATGCCTGGAATCTGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGGCATCTATATGACCAAGAAATCATTCAAGAAGAGGCCATTCTGAAGTGGGATGCCGAGAAAAAGGAAGCGGATGATTCGGACAAGCTTTTTGTCAAGCAGGCCGAGAAATTTATTGAATGGTTAAAAGTTGCATCAGAGGAAGAGGAAGAGGAAGAAGAAGAATAG 2196 40.44 MGAQRKGASRVSDDHEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVRTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLVYYEDKVDYAKGIIHLDKSLIMDNSSISLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTYEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSTYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGDNTKITNSIIGHGCSIGSNVKIEGSYIWDNVTIEDGCKLSHAIVCDGVVIKSGAELEPGVILSFKVVVGDQFTVPSYSKVSLFEQPTNQDSDEELEYADNSSGIVEFADTTDKSNSALMSKSLEMQGWPASELGKGGLGYVWSICEGSVEEEWRHSVAPIPADKLEKVLHKAPDDEVELTQDANVLPPSGELKSDSYISDGDDNESSRDDSIHFEKEVEATFLRAVHENIEVANVILEVNSLRLSFNKVASDCAGAIFYSLMNFALDSSRGSSGELLKNTTSIITKWKKLLKYYLTDLDEEIEVILKFEEICLESAKEFTPHFTKILWHLYDQEIIQEEAILKWDAEKKEADDSDKLFVKQAEKFIEWLKVASEEEEEEEEE 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26477023 26491601 + MELO3C004345.2.1 Cme05g01747 328810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01747 731 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Cme05g01747 731 SMART 542_3 637 724 IPR003307 GO:0005515
Cme05g01747 731 Gene3D Hexapeptide repeat proteins 319 443 - -
Cme05g01747 731 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 303 IPR029044 -
Cme05g01747 731 Pfam eIF4-gamma/eIF5/eIF2-epsilon 649 728 IPR003307 GO:0005515
Cme05g01747 731 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 729 - -
Cme05g01747 731 SUPERFAMILY Trimeric LpxA-like enzymes 268 429 IPR011004 -
Cme05g01747 731 MobiDBLite consensus disorder prediction 530 559 - -
Cme05g01747 731 ProSiteProfiles W2 domain profile. 557 728 IPR003307 GO:0005515
Cme05g01747 731 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
Cme05g01747 731 MobiDBLite consensus disorder prediction 545 559 - -
Cme05g01747 731 Gene3D - 550 729 - -
Cme05g01747 731 CDD W2_eIF2B_epsilon 558 722 IPR044123 GO:0005085|GO:0031369
Cme05g01747 731 CDD LbH_eIF2B_epsilon 341 419 - -
Cme05g01747 731 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Cme05g01747 731 SUPERFAMILY ARM repeat 563 719 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00396 Cme-Chr2:3252057 Cme05g01747 Cme-Chr5:26477023 4.32E-23 dispersed
Cme03g00189 Cme-Chr3:2270333 Cme05g01747 Cme-Chr5:26477023 6.71E-10 dispersed
Cme05g00968 Cme-Chr5:13439722 Cme05g01747 Cme-Chr5:26477023 4.39E-06 dispersed
Cme05g01747 Cme-Chr5:26477023 Cme03g01501 Cme-Chr3:24234776 3.68E-06 dispersed
Cme05g01747 Cme-Chr5:26477023 Cme02g01935 Cme-Chr2:25690317 1.41E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01747 K03240 - csv:101217025 1397.88